View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4066_high_3 (Length: 530)
Name: NF4066_high_3
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 26451136 - 26450817
Alignment:
| Q |
10 |
atgaacaagcaagctattccaccacttaagacaatgatcaaaaagctccaattctatgtttggatgcgtataagcaggaaaaacaaatccaataacaata |
109 |
Q |
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| T |
26451136 |
atgaacaagcaagctattccaccacttaagacaatgatcaaaaagctccaattctatgtttggatgcgtataagcaggaaaaacaaatccaataacaata |
26451037 |
T |
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| Q |
110 |
caaaacaagcaattcataaacaccacgattccaattaacaaaacatcgatgcccgtgtttggttccccgattgcaatgaattgataaagaacagttttct |
209 |
Q |
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| T |
26451036 |
caaaacaagcaattcataaacaccacgactccaattaacaaaacatcgatgaccgtgtttggttccgcgattgcaatgaattgataaagaacacttttct |
26450937 |
T |
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| Q |
210 |
cataaattatccatacataaatgaccttatgttaaactaacttttaatcaaaacaaattatagtataatcaactttggcaccgcagaaccaaacacatgc |
309 |
Q |
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| T |
26450936 |
cataaattatccatacataaatg-cgttatggtaaactaacttttaatcaaaaccaattatagtatattcaactttggcaccgcagaaccaaacacatgc |
26450838 |
T |
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| Q |
310 |
aaagtgaaggaaaccaaatga |
330 |
Q |
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| T |
26450837 |
aaagtgaaggaaaccaaatga |
26450817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 395 - 530
Target Start/End: Complemental strand, 26450752 - 26450614
Alignment:
| Q |
395 |
gaactaattctccaaccaaataacaaaaaacttag---tcaattatggaaatcttaccatcatcttccaagcaagatatccagttggtccacccttatgc |
491 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26450752 |
gaactaattctccaaccaaataacaaaaaacttagatatcaattatgaaagtcttaccatcatcttccaagcaagatatccagttggtccacccttatgc |
26450653 |
T |
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| Q |
492 |
ccttcaggatcatcctcattacaagcaatcccacgtctc |
530 |
Q |
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| T |
26450652 |
ccatcaggatcatcctcattacaagcaatcccacgtctc |
26450614 |
T |
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