View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4066_high_5 (Length: 385)
Name: NF4066_high_5
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 33109566 - 33109918
Alignment:
| Q |
16 |
acctattactggcgtatgaagatgcccgagacagctcgttacacggcacttgttgctaagaatggtaaacaagctgcttctgatatgtctaaggtgttac |
115 |
Q |
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| T |
33109566 |
acctattactggcgtatgaagatgcctgagacagctcgttacacggcacttgttgctaagaatggtaaacaagctgcttctgatatgtctaaggtgttac |
33109665 |
T |
|
| Q |
116 |
aagttgaaattgaagctgaagaggaaaaagtgcaacatttggctgagaatcaaaaccaaaagtttggtctttttaccagacaattcgcaaaacgacacgg |
215 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33109666 |
aagttgaaattgaagctgaagaggaaaaagtgcaaaatttggctgagaatcaaaaccaaaagtttggtctttttaccagacaattcgcaaaacgacacgg |
33109765 |
T |
|
| Q |
216 |
attgcacttgttggggacaacaactacttggttcttgttggacattgctttctacagtcagaatctttttcaaaaggatattttcaccgcgattgggtgg |
315 |
Q |
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| T |
33109766 |
attgcacttgttgggaacaacaactacttggttcttgttggacattgctttctacagtcagaatctttttcaaaaggatattttcaccgcgattgggtgg |
33109865 |
T |
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| Q |
316 |
atccctccagcaaaagaaatgaatgcaattaacgaactgtataggattgcaag |
368 |
Q |
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| T |
33109866 |
atccctccagcaaaagaaatgaatgcaattaacgaactgtataggattgcaag |
33109918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 16174890 - 16174567
Alignment:
| Q |
22 |
tactggcgtatgaagatgcccgagacagctcgttacacggcacttgttgctaagaatggtaaacaagctgcttctgatatgtctaaggtgttacaagttg |
121 |
Q |
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| T |
16174890 |
tactggcgaatgaaaatgccagaaacagctcgttacacggctcttgttgctaagaacgcgaaacaagctgctgcggatatgtctaaggtattgcaagttg |
16174791 |
T |
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| Q |
122 |
aaattgaagctgaagaggaaaaagtgcaacatttggctgagaatcaaaaccaaaagtttggtcttttt-accagacaattcgcaaaacgacacggattgc |
220 |
Q |
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|| |||||| |||||| || || || ||| | || || || |||| || |||| | ||| || | || ||||||||||||||||| || | | |
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| T |
16174790 |
aacttgaagttgaagaagagaaggtacaaaaaatgactagtgat-aaaaggaatagttatggcttgttcagcaagcaattcgcaaaacgacatggttggg |
16174692 |
T |
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| Q |
221 |
acttgttggggacaacaactacttggttcttgttggacattgctttctacagtcagaatctttttcaaaaggatattttcaccgcgattgggtggatccc |
320 |
Q |
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| T |
16174691 |
ctttgtttggaacatgtagtacttggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagcgcaatcggatggatccc |
16174592 |
T |
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| Q |
321 |
tccagcaaaagaaatgaatgcaatt |
345 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
16174591 |
tccggcaaaagaaatgaatgcaatt |
16174567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 16223862 - 16223980
Alignment:
| Q |
22 |
tactggcgtatgaagatgcccgagacagctcgttacacggcacttgttgctaagaatggtaaacaagctgcttctgatatgtctaaggtgttacaagttg |
121 |
Q |
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|||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||| | |||||||||||| | ||||||||||||||||| ||||||| |
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| T |
16223862 |
tactggcgaatgaaaatgccagaaacagctcgttacacggctcttgttgctaagaacgcgaaacaagctgctgcggatatgtctaaggtgttgcaagttg |
16223961 |
T |
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| Q |
122 |
aaattgaagctgaagagga |
140 |
Q |
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| T |
16223962 |
aacttgaagttgaagagga |
16223980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 345
Target Start/End: Original strand, 16184472 - 16184795
Alignment:
| Q |
22 |
tactggcgtatgaagatgcccgagacagctcgttacacggcacttgttgctaagaatggtaaacaagctgcttctgatatgtctaaggtgttacaagttg |
121 |
Q |
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|||||||| ||||| ||||| || ||||| |||||||| || |||||||||||||| | ||||||||||| | |||||||||||||| || ||||||| |
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| T |
16184472 |
tactggcgaatgaaaatgccagaaacagcccgttacaccgctcttgttgctaagaacgcgaaacaagctgccgcggatatgtctaaggtattgcaagttg |
16184571 |
T |
|
| Q |
122 |
aaattgaagctgaagaggaaaaagtgcaacatttggctgagaatcaaaaccaaaagtttggtcttttt-accagacaattcgcaaaacgacacggattgc |
220 |
Q |
| |
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|| |||||| ||||||||| || || ||| | || || || |||| || |||| | ||| || | || ||||||||| ||||||||| ||| |
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| T |
16184572 |
aacttgaagttgaagaggagaaggtacaaaaaatgactagtgat-aaaaggaatagttatggcttgttcagcaagcaattcgcagcacgacacggtttgg |
16184670 |
T |
|
| Q |
221 |
acttgttggggacaacaactacttggttcttgttggacattgctttctacagtcagaatctttttcaaaaggatattttcaccgcgattgggtggatccc |
320 |
Q |
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||||| || ||| | ||| ||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||| | ||| ||||| ||||| || |
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| T |
16184671 |
ctttgtttggaacatgtagtacatggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagcgcaattggatggatacc |
16184770 |
T |
|
| Q |
321 |
tccagcaaaagaaatgaatgcaatt |
345 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
16184771 |
tccggcaaaagaaatgaatgcaatt |
16184795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 16224084 - 16224185
Alignment:
| Q |
244 |
tggttcttgttggacattgctttctacagtcagaatctttttcaaaaggatattttcaccgcgattgggtggatccctccagcaaaagaaatgaatgcaa |
343 |
Q |
| |
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||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||| | ||| || || ||||||||||| ||||||||||||||||||| |
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| T |
16224084 |
tggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagcgcaatcggatggatccctccggcaaaagaaatgaatgcaa |
16224183 |
T |
|
| Q |
344 |
tt |
345 |
Q |
| |
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|| |
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|
| T |
16224184 |
tt |
16224185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 9699059 - 9699023
Alignment:
| Q |
243 |
ttggttcttgttggacattgctttctacagtcagaat |
279 |
Q |
| |
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|||||||||||| || ||||||||||||||||||||| |
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| T |
9699059 |
ttggttcttgttagatattgctttctacagtcagaat |
9699023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 33115832 - 33115892
Alignment:
| Q |
241 |
acttggttcttgttggacattgctttctacagtcagaatctttttcaaaaggatattttca |
301 |
Q |
| |
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||||||||||||||||| ||||||| || ||||| |||||||| || || |||||||||| |
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|
| T |
33115832 |
acttggttcttgttggatattgcttattatagtcaaaatcttttccagaaagatattttca |
33115892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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