View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4066_high_9 (Length: 292)
Name: NF4066_high_9
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_high_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 11164969 - 11164695
Alignment:
| Q |
18 |
aatacaacattgaaattcaccaaaaaataacaatacaacattaaaccccaaccctatataaatatcccttctcacattaaagattttagggacctttctt |
117 |
Q |
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| T |
11164969 |
aatacaacgttgaaattcaccaaaaaataacaatacaacattaaaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctt |
11164870 |
T |
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| Q |
118 |
tcactggcttccttgttctcctattcccattatcatcaccagaatcatcataatcatcctcataatcttcaacataatccaatcccttcgaacaagggac |
217 |
Q |
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| T |
11164869 |
tcactggcttccttgttctcctattcccattatcatcaccagaatcatcataatcatcctcataatcttcaacacaatccaatccctccgaacaagtaac |
11164770 |
T |
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| Q |
218 |
aacattagcatccacactaggaacaacattattatcaccaacattaaccttaacattatcactactagtagaacc |
292 |
Q |
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| T |
11164769 |
aacattagcatccacactaggaacaacattattatcaccaacattaaccttaacattatcactactagtagaacc |
11164695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 61 - 252
Target Start/End: Complemental strand, 11157837 - 11157646
Alignment:
| Q |
61 |
aaccccaaccctatataaatatcccttctcacattaaagattttagggacctttctttcactggcttccttgttctcctattcccattatcatcaccaga |
160 |
Q |
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| T |
11157837 |
aaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccattatcatcaccaga |
11157738 |
T |
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| Q |
161 |
atcatcataatcatcctcataatcttcaacataatccaatcccttcgaacaagggacaacattagcatccacactaggaacaacattattat |
252 |
Q |
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| T |
11157737 |
atcatcataatcatcctcataatcttcaacacaatccaatccctccgaacaagtaacaacattaacatcaacactattatcaacattattat |
11157646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 11177602 - 11177563
Alignment:
| Q |
170 |
atcatcctcataatcttcaacataatccaatcccttcgaa |
209 |
Q |
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| T |
11177602 |
atcatcctcataattttcaacataatccaatccctccgaa |
11177563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 4703324 - 4703448
Alignment:
| Q |
89 |
tcacattaaagattttagggacctttctttcactggcttccttgttctcctattcccattatcatcaccagaatcatcataatcatcctcataatcttca |
188 |
Q |
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| T |
4703324 |
tcacattaacgattttagtgacctttctttcacgggtttcctcattctcctcttcccattatc---------atcatcatattcatcctcataatcttca |
4703414 |
T |
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| Q |
189 |
acataatccaatcccttcgaacaagggacaacat |
222 |
Q |
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| T |
4703415 |
aaataattcaatccctcagaacaaggaacaacat |
4703448 |
T |
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