View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4066_low_12 (Length: 262)
Name: NF4066_low_12
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_low_12 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 123 - 262
Target Start/End: Original strand, 768742 - 768881
Alignment:
| Q |
123 |
atggattgggtcgtatatatgttctcgttagttttatggattgattcttgaagtgttgagggtaattcaaatttagtcaattagttaacttgcctgttgt |
222 |
Q |
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| T |
768742 |
atggattgggtcgtatatatgttctcgttagttttatggattgattcttgaagtgttgagggcaattcaaatttagtcaattagttaacttgcctgttgt |
768841 |
T |
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| Q |
223 |
ggaattagctaagtgttaggtggttgtaattatgtgtttt |
262 |
Q |
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| T |
768842 |
ggaagtaactaagtgttaggtggttgaaattatgtgtttt |
768881 |
T |
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Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 768587 - 768701
Alignment:
| Q |
1 |
tgttaccaaaaagaaaaacaaatcattggacacatcaagtatatgttttttgatgaatatacctatcaagtatctaatcctatgtcactattggcttgca |
100 |
Q |
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| T |
768587 |
tgttaccaaaaagaaaaacaaatcattggacacatcaagtgtatgttttttggtgaatatacctatcaagtatctaatcctatgtctctattggcgtgca |
768686 |
T |
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| Q |
101 |
tatgttctaatttgc |
115 |
Q |
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| T |
768687 |
tatattctaatttgc |
768701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 21296820 - 21296868
Alignment:
| Q |
176 |
tgttgaggg-taattcaaatttagtcaattagttaacttgcctgttgtg |
223 |
Q |
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| T |
21296820 |
tgttgagggataattcaaaattagtcaattagttagcttgcgtgttgtg |
21296868 |
T |
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