View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4066_low_14 (Length: 242)
Name: NF4066_low_14
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 10783216 - 10783438
Alignment:
| Q |
7 |
ttcccccttatgaataacctaaacctatattcttttatatatctctaaacattattaaagagaagagacatggctttaagtgggaaagtggaagctgaag |
106 |
Q |
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| T |
10783216 |
ttcccccttatgaagaacctaaacctatattcttttatatatctctaaacattattaaagagaagagacatggctttaagtgggaaagtggaggctgaag |
10783315 |
T |
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| Q |
107 |
tagagattcaagcaccagctgataagttttataatgtctgcaggaaacaagttgaacaaattcctaatatctccaatgaaatacatggagctagagtgca |
206 |
Q |
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| T |
10783316 |
tagagattcaagcacctggtgctaagttctataatattttcagaaagcaactagaacatcttcctaatatctccaatgaaatacatgaagctagagtgca |
10783415 |
T |
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| Q |
207 |
tgaaggtgactgggaaaatattg |
229 |
Q |
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| T |
10783416 |
tgaaggtgactgggaaaatattg |
10783438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 10775637 - 10775837
Alignment:
| Q |
29 |
acctatattcttttatatatctctaaacattattaaagagaagagacatggctttaagtgggaaagtggaagctgaagtagagattcaagcaccagctga |
128 |
Q |
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|||||||| ||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||| ||||| |||||||||||||| | | || |
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| T |
10775637 |
acctatatagttttatatatctctaaacaatattagagagttgatacatggctttaagtgggaaagtggagactgaaatagagattcaagcatctggtgc |
10775736 |
T |
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| Q |
129 |
taagttttataatgtctgcaggaaacaagttgaacaaattcctaatatctccaatgaaatacatggagctagagtgcatgaaggtgactgggaaaatatt |
228 |
Q |
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| T |
10775737 |
taagttctataatatatttagaaagcaactagaacatcttcctaatatcgccacagaagtacatggaggtaaagtgcatgaaggtgactgggaaaatatt |
10775836 |
T |
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| Q |
229 |
g |
229 |
Q |
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| T |
10775837 |
g |
10775837 |
T |
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