View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4066_low_16 (Length: 237)
Name: NF4066_low_16
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 3273637 - 3273425
Alignment:
| Q |
1 |
acatattaagaagttgataaaaagagaataatgataaatatttccaaatttgcccaattaaccttctacctttaatagttcttgatttctcctaacctaa |
100 |
Q |
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| T |
3273637 |
acatattaagaagttgataaaaagagaataatgataaatatttccaaatttgcccaattaaccttctacctttaatagttcttgatttctcctaacctac |
3273538 |
T |
|
| Q |
101 |
tatcctaaagcattgctatgcagcattaagttttggcaagttttgatccattgaatgcatataaactacatataatttggcttaacatacaaacaaattt |
200 |
Q |
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| T |
3273537 |
tatcctaaaacattgctatgcagcattaaggtttggcaagtgttgatgcattgaatgcatataaactacatataatttggcttaacatacaaacaaattt |
3273438 |
T |
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| Q |
201 |
taatcaaatgatt |
213 |
Q |
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||||||||||||| |
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| T |
3273437 |
taatcaaatgatt |
3273425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 3275079 - 3275178
Alignment:
| Q |
96 |
cctaatatcctaaagcattgctatgcagcatta-agttttggcaagttttgatccattgaatgcatataaactacatataatttggcttaacatacaaac |
194 |
Q |
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|||||||||| ||||||||||| ||| |||||| ||||||||||||| |||||||||| ||||||||||||| | || |||||||||||| | |||||| |
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| T |
3275079 |
cctaatatcccaaagcattgctttgctgcattatagttttggcaagtattgatccattaaatgcatataaacaaagtagaatttggcttaaaaaacaaac |
3275178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 3281419 - 3281489
Alignment:
| Q |
96 |
cctaatatcctaaagcattgctatgcagcatta-agttttggcaagttttgatccattgaatgcatataaa |
165 |
Q |
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|||||||||| ||||||||||| |||||||| | ||||||||||||| |||||||||| |||||||||||| |
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| T |
3281419 |
cctaatatcccaaagcattgctctgcagcataatagttttggcaagtgttgatccattaaatgcatataaa |
3281489 |
T |
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