View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4066_low_4 (Length: 513)
Name: NF4066_low_4
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Complemental strand, 43709558 - 43709071
Alignment:
| Q |
12 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43709558 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
43709459 |
T |
|
| Q |
112 |
taagaatgaaaagttacgtggagaaagctgtgcagatggagatgctaaaggagaatgcggaagatatagcgttggaaatggagaggcttaagacaaaatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43709458 |
taagaatgaaaagttacgtggagaaagatgtgcagatggagatgctgaaggagaatgcggaaggtatagcgttggaaatggagaggcttaagacaaaatt |
43709359 |
T |
|
| Q |
212 |
ggctactcttgaggtagatcttaacatagcaagagacttgttgatggaagaaggcttcaatgggatagatttgaatgttgaactaggatatgggatacca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43709358 |
ggctactcttgaggtagatcttaacatagcaagagacttgttgatggaagaaggcttcaatgggatagatttgaatgttgaactaggatatgggatacca |
43709259 |
T |
|
| Q |
312 |
tagacctctttctctacattaacatgcatgtttatatggatggatttttaatgtcttgaataaattgtgactgcttgtctatctctctaataatacaatg |
411 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43709258 |
tagacctctttctctacattaatatgcatgtttatatggatggatttttaatgtcttgaataaattgtgactgcttgtctatctctctaataatacaatg |
43709159 |
T |
|
| Q |
412 |
ttattgcagattcatctgttgacaaccgtaagtctttttattatatatattcaactattgttcattgttcaatgcgtattgttgttgat |
500 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43709158 |
ttattgcagattcatctgttgacaactg-aagtctttttattatatatattcaactattgttcattgttcaatgcgtattgttgttgat |
43709071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 43695665 - 43695538
Alignment:
| Q |
12 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
111 |
Q |
| |
|
|||||||| || ||||| |||||||||||| ||||||||||||||||||||| ||| ||||||| |||||||||| || || |||||||||| ||||| |
|
|
| T |
43695665 |
atgaatgaccaggcttgtaaggatcttcaagttttatgggaggaacttgagaagtttaaatttgatatggcttggcttgatccccatgttcaatctgctt |
43695566 |
T |
|
| Q |
112 |
taagaatgaaaagttacgtggagaaagc |
139 |
Q |
| |
|
|| |||| ||||| || ||||||||||| |
|
|
| T |
43695565 |
taggaattaaaagctatgtggagaaagc |
43695538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 43707834 - 43707701
Alignment:
| Q |
12 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
111 |
Q |
| |
|
|||||||| ||| |||| |||||| | || |||||| ||||||||||||| |||| |||||||||| |||||||||||| |||||| ||| ||||| |
|
|
| T |
43707834 |
atgaatgaccaaccttgtaaggatactaaagttttatacgaggaacttgagaaatttagatttgatctcacttggctagagctccatgttaaatgtgctt |
43707735 |
T |
|
| Q |
112 |
taagaatgaaaagttacgtggagaaagctgtgca |
145 |
Q |
| |
|
|| |||||||||||| |||||||||| |||||| |
|
|
| T |
43707734 |
taggaatgaaaagttttgtggagaaagttgtgca |
43707701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 43691259 - 43691186
Alignment:
| Q |
32 |
ggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaat |
105 |
Q |
| |
|
||||||||||||||| |||||||||||| || |||||| |||||| || ||||||||||| ||||||||||| |
|
|
| T |
43691259 |
ggatcttcaaattttttgggaggaacttcagccatttggttttgatttgtcttggctagagtatcatgttcaat |
43691186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 43696455 - 43696330
Alignment:
| Q |
12 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
111 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||||||||||||| | |||||| ||| || || ||||||| || ||||||||||| || | |
|
|
| T |
43696455 |
atgaatgatttagcttgtaaggatcttcaaattttctgggaggaacttgggccatttggtttttatttgatatggctagggcttcatgttcaatcagcct |
43696356 |
T |
|
| Q |
112 |
taagaatgaaaagttacgtggagaaa |
137 |
Q |
| |
|
|| |||||||| |||| |||||||| |
|
|
| T |
43696355 |
taggaatgaaatgttatttggagaaa |
43696330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 15827243 - 15827371
Alignment:
| Q |
12 |
atgaatgatcaagcttgcaaggatcttcaaattttatgggaggaacttgagatatttggatttgatctggcttggctagagcctcatgttcaatttgctt |
111 |
Q |
| |
|
|||||||| |||||||| |||||||||||| |||||||||||||||| | || |||| ||||||| | |||||||||| | |||||||| | ||||| |
|
|
| T |
15827243 |
atgaatgaacaagcttgtaaggatcttcaagttttatgggaggaactagcgaaatttaaatttgatattacttggctagaatcgcatgttcactatgctt |
15827342 |
T |
|
| Q |
112 |
taagaatgaaaagttacgtggagaaagct |
140 |
Q |
| |
|
|| |||| ||||| ||| ||||||||||| |
|
|
| T |
15827343 |
taggaataaaaagatacatggagaaagct |
15827371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University