View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4066_low_8 (Length: 307)
Name: NF4066_low_8
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_low_8 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 307
Target Start/End: Original strand, 479379 - 479681
Alignment:
| Q |
5 |
ttctcttcacacagcataagcatcgtgtgtaatttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggtgttgata |
104 |
Q |
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| T |
479379 |
ttctcttcacacaacataagcatcgtgtataatttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggtgttgata |
479478 |
T |
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| Q |
105 |
gagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaacca |
204 |
Q |
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| T |
479479 |
gagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaacca |
479578 |
T |
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| Q |
205 |
ttcttcttgctcctgttgcttatttttccgggtacttctctttcattgctttatttatattattttcttcattaatattaagtgtattaattaaaaataa |
304 |
Q |
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| T |
479579 |
ttcttcttgctcctgttgcttatttttccgggtacttctatttcattgctttatttatattattttcttcattaatattaagtgtattaattaaaaataa |
479678 |
T |
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| Q |
305 |
tat |
307 |
Q |
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||| |
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| T |
479679 |
tat |
479681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 37 - 239
Target Start/End: Original strand, 473937 - 474139
Alignment:
| Q |
37 |
tttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcac |
136 |
Q |
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| T |
473937 |
tttggaaagcaaagatgggatgtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcat |
474036 |
T |
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| Q |
137 |
aagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccggg |
236 |
Q |
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| T |
474037 |
aagagtcacccttttggagggtatgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctggg |
474136 |
T |
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| Q |
237 |
tac |
239 |
Q |
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||| |
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| T |
474137 |
tac |
474139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 466498 - 466672
Alignment:
| Q |
64 |
acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag |
163 |
Q |
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| T |
466498 |
acatggagtactacctgccaataatagttatgttgttgatacagttaatatttgcaggtcagactcttggcacaagaatggcacttttggagggtatgag |
466597 |
T |
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| Q |
164 |
ccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta |
238 |
Q |
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| T |
466598 |
tccaaggatatttgtagtataccgtagtgcttttgcaaccattgttcttgctcccctcgcttatttatcagggta |
466672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 454763 - 454850
Alignment:
| Q |
37 |
tttggaaagcaaagatgggat---gtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcagg |
121 |
Q |
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| T |
454763 |
tttggaaagtaaagatgggatattgtttagacatggagtactaccttccagtattggccatggtgttgacacagtttatatattcagg |
454850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 445767 - 445863
Alignment:
| Q |
133 |
gcacaagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttattt |
229 |
Q |
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| T |
445767 |
gcacaagaattgcacttttggagggtatgagcccggcggtatttgtaatgtaccgtaatgcttttgcaaccatttttcttgctccaattgcttattt |
445863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 454890 - 454956
Alignment:
| Q |
172 |
tatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggta |
238 |
Q |
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| T |
454890 |
tatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta |
454956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 27493931 - 27493754
Alignment:
| Q |
64 |
acatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcacaagaattgtatttttgcagggtttgag |
163 |
Q |
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| T |
27493931 |
acatggagtactacttaccaataatggttatgttattgatacagttaatatattcaggcttgactcttggtacaagaattgtacttttggagggtttgag |
27493832 |
T |
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| Q |
164 |
ccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccgggtactt |
241 |
Q |
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| T |
27493831 |
tccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggtactt |
27493754 |
T |
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