View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4066_low_9 (Length: 303)
Name: NF4066_low_9
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_low_9 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 44640848 - 44641132
Alignment:
| Q |
14 |
taaccaaaataatcaaatcaaagagtacagtcacagagtagagacatttaactgaaaa----aatgaatcaatcaactagctataatgattcatatctgc |
109 |
Q |
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| T |
44640848 |
taaccaaaataatcaaatcaa-gagtacagtcacagagtagagacatttaacagaaaaaaaaaatgaatcaatcaactagctataatgattcatatctgc |
44640946 |
T |
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| Q |
110 |
gtctatgtccatacaaatcaaagggttcccaaagtgcatcaagaggacaaggttttgattcatcaagtctcctccatggttttccactaccagaccaatg |
209 |
Q |
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| T |
44640947 |
gtctatgtccatacaaatcaaagggttcccaaagtgcatcaagaggacaaggttttgattcatcaagtctcctccatggttttccactaccagaccaatg |
44641046 |
T |
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| Q |
210 |
caacaaactaacaggaccaggatgcaaatctctacaactacctttcacattatcaccacctaaaccatgttgattccacctatgct |
295 |
Q |
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| T |
44641047 |
caacaaactaacaggaccaggatgcaaatctctacaactacctttcacattatcaccacctaaaccatgttgattccacctatgct |
44641132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 266
Target Start/End: Complemental strand, 246576 - 246400
Alignment:
| Q |
90 |
ctataatgattcatatctgcgtctatgtccatacaaatcaaagggttcccaaagtgcatcaagaggacaaggttttgattcatcaagtctcctccatggt |
189 |
Q |
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|||| ||||||||| ||| ||| |||||||||||||||||| ||| ||||||| ||||||||||||||| | ||| | |||||||||| |||||||| |
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| T |
246576 |
ctatgatgattcatgtctacgttgatgtccatacaaatcaaaaggtgcccaaagagcatcaagaggacaatggtttcctgaatcaagtctcttccatggt |
246477 |
T |
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| Q |
190 |
tttccactaccagaccaatgcaacaaactaacaggaccaggatgcaaatctctacaactacctttcacattatcacc |
266 |
Q |
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| T |
246476 |
ttaccactaccagaccaatgtagaaaactaacactagcagcacgcaaatgtctacgactaccattgacattgtcacc |
246400 |
T |
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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 170 - 293
Target Start/End: Original strand, 2498485 - 2498608
Alignment:
| Q |
170 |
catcaagtctcctccatggttttccactaccagaccaatgcaacaaactaacaggaccaggatgcaaatctctacaactacctttcacattatcaccacc |
269 |
Q |
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| T |
2498485 |
catcaagtcttctccatggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccacc |
2498584 |
T |
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| Q |
270 |
taaaccatgttgattccacctatg |
293 |
Q |
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| T |
2498585 |
aagaccatgttgattccatctatg |
2498608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 170 - 293
Target Start/End: Original strand, 27101073 - 27101196
Alignment:
| Q |
170 |
catcaagtctcctccatggttttccactaccagaccaatgcaacaaactaacaggaccaggatgcaaatctctacaactacctttcacattatcaccacc |
269 |
Q |
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| T |
27101073 |
catcaagtcttctccatggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccacc |
27101172 |
T |
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| Q |
270 |
taaaccatgttgattccacctatg |
293 |
Q |
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| T |
27101173 |
aagaccatgttgattccatctatg |
27101196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 293
Target Start/End: Original strand, 48999191 - 48999280
Alignment:
| Q |
204 |
ccaatgcaacaaactaacaggaccaggatgcaaatctctacaactacctttcacattatcaccacctaaaccatgttgattccacctatg |
293 |
Q |
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| T |
48999191 |
ccaatgcaataaactaataggaccagggtgtaaacttctacatttaccttcaatgttatctccacctaaaccatgttggttccatctatg |
48999280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 293
Target Start/End: Original strand, 15964258 - 15964347
Alignment:
| Q |
204 |
ccaatgcaacaaactaacaggaccaggatgcaaatctctacaactacctttcacattatcaccacctaaaccatgttgattccacctatg |
293 |
Q |
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| T |
15964258 |
ccaatgcaataaactaacaggaccaggatgcaaagatctacaaacaccattcaaattatcaccaccaagtccatgttgattccatctatg |
15964347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 295
Target Start/End: Complemental strand, 42171876 - 42171785
Alignment:
| Q |
204 |
ccaatgcaacaaactaacaggaccaggatgcaaatctctacaactacctttcacattatcaccacctaaaccatgttgattccacctatgct |
295 |
Q |
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| T |
42171876 |
ccaatgcaaaagactcaccggaccaggatgcaaatcacggcaaagaccttccacattatcaccacctaacccatgctgattccatctatgct |
42171785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 293
Target Start/End: Original strand, 6635025 - 6635114
Alignment:
| Q |
204 |
ccaatgcaacaaactaacaggaccaggatgcaaatctctacaactacctttcacattatcaccacctaaaccatgttgattccacctatg |
293 |
Q |
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| T |
6635025 |
ccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctatg |
6635114 |
T |
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