View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4067_high_13 (Length: 310)

Name: NF4067_high_13
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4067_high_13
NF4067_high_13
[»] chr5 (1 HSPs)
chr5 (18-310)||(1720688-1720980)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 1720980 - 1720688
Alignment:
Q  18 atgttggcgtgttttcgacccaatgaatttgcttttgcaagtgtgctctgtgcttgtgaagagcaagatgttaaatatggcttgcaggtacatgctgctg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1720980 atgttggcgtgttttcgacccaatgaatttgcttttgcaagtgtgctctgtgcttgtgaagagcaagatgttaaatatggcttgcaggtacatgctgctg 1720881  T
Q  118 ctttgaaaatgtcgttggatttcagtgtatatgttgcaaatgctcttattacgatgtatagcaagtgttctggtggtttcggtggaagttgtgatcaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1720880 ctttgaaaatgtcgttggatttcagtgtatatgttgcaaatgctcttattacgatgtatagcaagtgttctggtggtttcggtggaagttgtgatcaaac 1720781  T
Q  218 cacagatgatgcgtggatggtgttcaagtcaatggagtacggaaatcttatatcttggaattcgatgatttcaggttttcaattccgtggact 310  Q
    ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1720780 cacggatgatgcgtggatggtgttcaagtcgatggagtacagaaatcttatatcttggaattcgatgatttcaggttttcaattccgtggact 1720688  T

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