View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_high_14 (Length: 303)
Name: NF4067_high_14
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 42509485 - 42509198
Alignment:
| Q |
16 |
atgaactagattactcttgatcgattatgtcattnnnnnnnttagaaataagacgtaccatgaaggcgaacagctaggctaccgttctgaacaaagtcag |
115 |
Q |
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| T |
42509485 |
atgaactagattactcttgatcgattctgtcattaaaaaaattagaaataagacgtaccatgaaggcgaacagctaggctaccgttctgaacaaagtcgg |
42509386 |
T |
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| Q |
116 |
taaccaagagcttttcttcttttctataatagtaagcaacaagaggaatcaaattaggatggttcaaccttccaatccttctcatatgctcttgaaactc |
215 |
Q |
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| T |
42509385 |
taaccaagagcttctcttcttttctataatagtaagcaacaagaggaatcaaattaggatggttcaaccttccaatccttctcatatgctcttgaaactc |
42509286 |
T |
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| Q |
216 |
ttccttccctacattgttcatttgcttaaacctcttcaccactattgttggcccattcgtcaaagaggccttgtaagaagaactataa |
303 |
Q |
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| T |
42509285 |
ttccttccctacattgttcatttgcttaaacctcttcaccactattgttggcccattcgtcaaagaggccttgtaagaagaactataa |
42509198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 36125513 - 36125383
Alignment:
| Q |
124 |
agcttttcttcttttctataatagtaagcaacaagaggaatcaaattaggatggttcaaccttccaatccttctcatatgctcttgaaactcttccttcc |
223 |
Q |
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||||| || ||||||| ||||||| | ||||| ||||| | | ||||||||| |||||||||||| |||||||||||| || | ||||||| || | |
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| T |
36125513 |
agcttctcatcttttccataatagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttttgc |
36125414 |
T |
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| Q |
224 |
ctacattgttcatttgcttaaacctcttcac |
254 |
Q |
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| T |
36125413 |
caactttgttcatgtgcttaaatcttttcac |
36125383 |
T |
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