View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4067_high_15 (Length: 301)

Name: NF4067_high_15
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4067_high_15
NF4067_high_15
[»] chr1 (1 HSPs)
chr1 (1-301)||(46809270-46809572)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 46809270 - 46809572
Alignment:
Q  1 tttttctatttctaacagttgatcattatccttcttcttgtagtctttcgacctatctggaaatcaaaacaacccatcatactttcgcggattcagcaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46809270 tttttctatttctaacagttgatcattatccttcttcttgtagtctttcgacctatctggaaatcaaaacaacccatcatactttcgcggattcagcaag 46809369  T
Q  101 agtattctagaggcctcctttaatgtaagcatgcaagcaacacatgttatttgacttaatttgtataaattgtcatcaactctttcatatatctt--tta 198  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  | |    
T  46809370 agtattctagaggcctcctttaatgtaagcatgcaagcagcacatgttatttgacttaatttgtataaattgtcatcaactctttcatatatatttataa 46809469  T
Q  199 tatataactaaaataaattgtgttcttgtttctatgggtgcaaatatagaccgactacgagaccatagagagagttctcttagaagagcacgagcacgag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46809470 tatataactaaaataaattgtgttcttgtttctatgggtgcaaatatagaccgactacgagaccatagagagagttctcttagaagagcacgagcatgag 46809569  T
Q  299 cag 301  Q
    |||    
T  46809570 cag 46809572  T

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