View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4067_high_16 (Length: 291)
Name: NF4067_high_16
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 42509197 - 42508926
Alignment:
| Q |
1 |
aaaccacttcccaaaatctcagcagaagctctcagcaactcttgcaaatcaaacctctctctgtcatctcttataaaagacaacttcatgtgatcatttc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42509197 |
aaaccacttcccaaaatctcggcagaagctctcagcaactcttgcaaatcaaacctctctctgtcatctcttataaaagacaacttcatgtgatcatttc |
42509098 |
T |
|
| Q |
101 |
ttctactgtgattggaactcattgatcttgatgatctattactttcattatcaatatctctttcacttccaacttttttgttgttgtagtggcctgaagg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42509097 |
ttctactgtggttggaactcattgatcttgatgatctattactttcatcatcaatatctctttcacttccaacttttttgttgttgtagtggcctgaagg |
42508998 |
T |
|
| Q |
201 |
tggattctctagagtcgatgatggctcttgttttctttgccgccggtgtaggatgaaaaacacagtaactcc |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42508997 |
tggattctctagagtcgatgatggctcttgttttcttcgccgccggtgtaggatgaaaaacacagtaactcc |
42508926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University