View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_high_19 (Length: 279)
Name: NF4067_high_19
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 52245333 - 52245596
Alignment:
| Q |
1 |
aaatcatgtttgatacacttgacaacctcttcnnnnnnncatgtttctctccttcagaaatagacattcttgttgtcaatgtttctttgttctcaccatc |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52245333 |
aaatcatgtttgatacacttgacaacctcttcaaaaaaacatgtttctctccttcagaaatagacattcttgttgtcaatgtttctttgttctcaccagc |
52245432 |
T |
|
| Q |
101 |
accttcactcacagcaagaataataaacagatacaaaatgagagaagatgtaaaagtcttcaatcttgcaggaatggggtgtagtgcaagtgttgttgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52245433 |
accttcactcacagcaagaataataaacagatacaaaatgagagaagatgtaaaagtcttcaatcttgcaggaatggggtgtagtgcaagtgttgttgct |
52245532 |
T |
|
| Q |
201 |
attgatcttgttcaacagcttttcaaaacatatgaaaattcccttggaattgttgtgagcacag |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52245533 |
attgatcttgttcaacagcttttcaaaacatatgaaaattcccttggaattgttgtgagcacag |
52245596 |
T |
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