View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4067_high_20 (Length: 249)

Name: NF4067_high_20
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4067_high_20
NF4067_high_20
[»] chr3 (5 HSPs)
chr3 (32-135)||(9102588-9102691)
chr3 (113-178)||(35409994-35410058)
chr3 (113-176)||(16473946-16474009)
chr3 (129-175)||(19545768-19545814)
chr3 (113-169)||(15997499-15997555)
[»] chr5 (5 HSPs)
chr5 (32-137)||(42639878-42639982)
chr5 (108-172)||(42859574-42859638)
chr5 (139-177)||(43065370-43065408)
chr5 (78-135)||(37999731-37999788)
chr5 (76-139)||(30908960-30909023)
[»] chr2 (6 HSPs)
chr2 (32-136)||(40730655-40730759)
chr2 (117-177)||(19710390-19710450)
chr2 (116-178)||(16132414-16132476)
chr2 (113-178)||(27979250-27979315)
chr2 (113-178)||(28065779-28065844)
chr2 (114-175)||(28502822-28502884)
[»] chr7 (3 HSPs)
chr7 (59-137)||(1818889-1818967)
chr7 (103-176)||(12197517-12197589)
chr7 (131-175)||(10531046-10531091)
[»] chr4 (3 HSPs)
chr4 (113-176)||(49496850-49496913)
chr4 (113-160)||(41947466-41947513)
chr4 (131-175)||(3294769-3294814)
[»] scaffold0657 (1 HSPs)
scaffold0657 (113-176)||(5534-5597)
[»] chr6 (4 HSPs)
chr6 (113-176)||(25003812-25003875)
chr6 (113-176)||(34635176-34635239)
chr6 (117-172)||(16110252-16110307)
chr6 (77-135)||(32452052-32452110)
[»] chr8 (1 HSPs)
chr8 (113-179)||(21233073-21233139)
[»] chr1 (2 HSPs)
chr1 (117-178)||(24274815-24274875)
chr1 (129-176)||(37668649-37668695)
[»] scaffold0807 (1 HSPs)
scaffold0807 (113-172)||(1191-1250)


Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 9102691 - 9102588
Alignment:
Q  32 aggtttttcttatattctttacacatataataaattattgaactctaaattacaaattgagaaaattatagaaaagaacagatataaaatattggggtgt 131  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9102691 aggtttttcttaaattctttacacatataataaattattgaactctaaattacaaattgagaaaattatagaaaagaacaggtataaaatattggggtgt 9102592  T
Q  132 taca 135  Q
    ||||    
T  9102591 taca 9102588  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 35410058 - 35409994
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaagt 178  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35410058 atataaaatattggggcgttacattatta-ccccttaaaatagtttcgtcctcgaaactagaaagt 35409994  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 16474009 - 16473946
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaa 176  Q
    ||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  16474009 atataaaatatcgggatgttacattcttacccccttaaaatagtttcgtcctcgaaactagaaa 16473946  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 19545768 - 19545814
Alignment:
Q  129 tgttacattattatccccttaaaatagtttcgtcctcgaaactagaa 175  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  19545768 tgttacattattatccctttaaaatagtttcgtcctcgaaactagaa 19545814  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 15997499 - 15997555
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaa 169  Q
    |||||||||||| ||| |||||||||||  || ||||||||||||||||||||||||    
T  15997499 atataaaatattagggcgttacattattcccctcttaaaatagtttcgtcctcgaaa 15997555  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 42639982 - 42639878
Alignment:
Q  32 aggtttttcttatattctttacacatataataaattattgaactctaaattacaaattgagaaaattatagaaaagaacagatataaaatattggggtgt 131  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  |||||||| |||||||||    
T  42639982 aggtttttcttaaattctttacacatataataaattattgaacactaaattacaaattgagataattatagaaaagaacatgtataaaat-ttggggtgt 42639884  T
Q  132 tacatt 137  Q
    ||||||    
T  42639883 tacatt 42639878  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 42859638 - 42859574
Alignment:
Q  108 aacagatataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaacta 172  Q
    |||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  42859638 aacatatataaaatattggggcgttacattattacccccttaaaatagtttcgtcctcaaaacta 42859574  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 43065370 - 43065408
Alignment:
Q  139 ttatccccttaaaatagtttcgtcctcgaaactagaaag 177  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  43065370 ttatccctttaaaatagtttcgtcctcgaaactagaaag 43065408  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 37999788 - 37999731
Alignment:
Q  78 aaattacaaattgagaaaattatagaaaagaacagatataaaatattggggtgttaca 135  Q
    |||| ||||||||||||||||||  |||||||||  |||||||||||||| |||||||    
T  37999788 aaatgacaaattgagaaaattattcaaaagaacatgtataaaatattgggatgttaca 37999731  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 30909023 - 30908960
Alignment:
Q  76 ctaaattacaaattgagaaaattatagaaaagaacagatataaaatattggggtgttacattat 139  Q
    |||||| | |||||||||||| |||  ||||||||| ||||||||||||||| ||||| |||||    
T  30909023 ctaaatgataaattgagaaaactattcaaaagaacatatataaaatattgggatgttatattat 30908960  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 40730655 - 40730759
Alignment:
Q  32 aggtttttcttatattctttacacatataataaattattgaactctaaattacaaattgagaaaattatagaaaagaacagatataaaatattggggtgt 131  Q
    |||||||||||| ||||||||  |||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||  |||||| |||||||||||    
T  40730655 aggtttttcttaaattctttatgcatataataaattatttaacactaaattacaaattgagaaaattctataaaagaacaagtataaagtattggggtgt 40730754  T
Q  132 tacat 136  Q
    |||||    
T  40730755 tacat 40730759  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 19710390 - 19710450
Alignment:
Q  117 aaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaag 177  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19710390 aaaatattggggtgttacattattacccccttaaaatagtttcgtcctcgaaactagaaag 19710450  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 16132414 - 16132476
Alignment:
Q  116 taaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaagt 178  Q
    ||||||||||||| |||||||||||| || |||||||||||||||||||| | ||||||||||    
T  16132414 taaaatattggggcgttacattattaccctcttaaaatagtttcgtcctcaatactagaaagt 16132476  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 27979250 - 27979315
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaagt 178  Q
    |||||||||||  |||||||||| ||||||| |||||||||| || |||||||||||||| |||||    
T  27979250 atataaaatatgagggtgttacaatattatctccttaaaataattacgtcctcgaaactacaaagt 27979315  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 28065779 - 28065844
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaagt 178  Q
    |||||||||||  |||||||||| ||||||| |||||||||| || |||||||||||||| |||||    
T  28065779 atataaaatatgagggtgttacaatattatctccttaaaataattacgtcctcgaaactacaaagt 28065844  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 28502822 - 28502884
Alignment:
Q  114 tataaaatattggggtgttacattattatcccctt-aaaatagtttcgtcctcgaaactagaa 175  Q
    |||||||||| | | ||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  28502822 tataaaatatcgagatgttacattattacccccttaaaaatagtttcatcctcgaaactagaa 28502884  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 1818889 - 1818967
Alignment:
Q  59 taataaattattgaactctaaattacaaattgagaaaattatagaaaagaacagatataaaatattggggtgttacatt 137  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||||||||  |||||| |||||||||||||||||    
T  1818889 taataaattattgaacactaaattacaaattgagaaaattctataaaagaacaagtataaagtattggggtgttacatt 1818967  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 12197517 - 12197589
Alignment:
Q  103 aaaagaacagatataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaa 176  Q
    |||| |||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||  ||||||||||||    
T  12197517 aaaaaaacatatataaaatattggggcgttacattatta-ccccttaaaatagtttcttctccgaaactagaaa 12197589  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 10531046 - 10531091
Alignment:
Q  131 ttacattattatccccttaaaa-tagtttcgtcctcgaaactagaa 175  Q
    ||||||||||| |||||||||| | |||||||||||||||||||||    
T  10531046 ttacattattacccccttaaaaattgtttcgtcctcgaaactagaa 10531091  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 49496913 - 49496850
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaa 176  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49496913 atataaaatatcgggatgttacattattacccccttaaaatagtttcgtcctcgaaactagaaa 49496850  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 41947466 - 41947513
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcg 160  Q
    |||||||||||||| | ||||||||||||  |||||||||||||||||    
T  41947466 atataaaatattggagcgttacattattactcccttaaaatagtttcg 41947513  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 3294814 - 3294769
Alignment:
Q  131 ttacattattatccccttaa-aatagtttcgtcctcgaaactagaa 175  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||    
T  3294814 ttacattattacccccttaagaattgtttcgtcctcgaaactagaa 3294769  T

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Target: scaffold0657 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 5534 - 5597
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaa 176  Q
    ||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  5534 atataaaatatcgggatgttacattcttacccccttaaaatagtttcgtcctcgaaactagaaa 5597  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 25003875 - 25003812
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaa 176  Q
    ||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  25003875 atataaaatatcgggatgttacattcttacccccttaaaatagtttcgtcctcgaaactagaaa 25003812  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 34635239 - 34635176
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaa 176  Q
    ||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  34635239 atataaaatatcgggatgttacattcttacccccttaaaatagtttcgtcctcgaaactagaaa 34635176  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 16110252 - 16110307
Alignment:
Q  117 aaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaacta 172  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  16110252 aaaatattagggcgttacattattatccccttaaaatagtttcgtcctctaaacta 16110307  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 32452052 - 32452110
Alignment:
Q  77 taaattacaaattgagaaaattatagaaaagaacagatataaaatattggggtgttaca 135  Q
    ||||| ||||||| ||||||||||  |||||||||  |||||||||||||| |||||||    
T  32452052 taaatgacaaattaagaaaattattcaaaagaacatgtataaaatattgggatgttaca 32452110  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 21233073 - 21233139
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaagtg 179  Q
    ||||||||||||||| ||||||||||||| || |||||||||||||||||||| ||| |||||||||    
T  21233073 atataaaatattgggatgttacattattacccacttaaaatagtttcgtcctcaaaattagaaagtg 21233139  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 24274875 - 24274815
Alignment:
Q  117 aaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaactagaaagt 178  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24274875 aaaatattgggc-gttacattattacccccttaaaatagtttcgtcctcgaaactagaaagt 24274815  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 37668649 - 37668695
Alignment:
Q  129 tgttacattattatccccttaaaatagtttcgtcctcgaaactagaaa 176  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37668649 tgttacattatta-ccccttaaaatagtttcgtcctcgaaactagaaa 37668695  T

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Target: scaffold0807 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 1191 - 1250
Alignment:
Q  113 atataaaatattggggtgttacattattatccccttaaaatagtttcgtcctcgaaacta 172  Q
    ||||||||| |||||  |||||||||||| |||||||||| |||||||||||||||||||    
T  1191 atataaaattttgggtcgttacattattacccccttaaaacagtttcgtcctcgaaacta 1250  T

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