View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_high_27 (Length: 238)
Name: NF4067_high_27
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 52795245 - 52795467
Alignment:
| Q |
17 |
acgttttataatcaattactctaacatttaccaggtgacatgagtaaattcctacaaatgagccataaaatattttgtaacacctttactctcaaatggt |
116 |
Q |
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| T |
52795245 |
acgttttataatcaattattctaacatttaccaggtgacatgagtaaattcctacaaatgagccataaaatattttgtaacacctttactctcaaatggt |
52795344 |
T |
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| Q |
117 |
atttcaacttttaaaagcttctggtt-nnnnnnnnnnngcttttatatccctttttgtaacaaaataaatggcattaattcaataaataatttaatattg |
215 |
Q |
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| T |
52795345 |
atttcaacttttaaaagcttctggttaaaaaaaaaaaagcttttatatccctttttgtaacaaaataaatggcattaattcaataaataatttaatattg |
52795444 |
T |
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| Q |
216 |
agaaatgttacttggacgatatt |
238 |
Q |
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| T |
52795445 |
agaaatgttacttggacgatatt |
52795467 |
T |
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