View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_high_28 (Length: 236)
Name: NF4067_high_28
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12618038 - 12618256
Alignment:
| Q |
1 |
tgatgatgatggtcgtcttcaaattcatcgtttgcttcacgcgattcacttgccgatgattctctgcgaccacaatactttgatattatggtgtagtaag |
100 |
Q |
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| T |
12618038 |
tgatgatgatggtcgtcttcaaattcatcgtttgcttcacgcgattcactcgccgatgattctctgcgaccacaatactttgatattatggtgtagtaag |
12618137 |
T |
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| Q |
101 |
ttacaagaagaaaagcacttgctaagattccaatgattgcaatgacaagaggagaaaaatttggacttgaatcttcatcagggaattcaaagggagaagg |
200 |
Q |
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| T |
12618138 |
ttacaagaagaaaagcacttgctaagattccaatgattgcaatgacaagaggagaaaaatttggacttgaatcttcatcagggaattcaaagggagaagg |
12618237 |
T |
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| Q |
201 |
agaaggtggagggtagatt |
219 |
Q |
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| T |
12618238 |
agaaggtggagggtagatt |
12618256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 183
Target Start/End: Original strand, 27771880 - 27772005
Alignment:
| Q |
58 |
gattctctgcgaccacaatactttgatattatggtgtagtaagttacaagaagaaaagcacttgctaagattccaatgattgcaatgacaagaggagaaa |
157 |
Q |
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| T |
27771880 |
gattctctgtgaccacaatatttggatattagagtgtaataagttagtagtaaaaaagcagtggctaaaactcccaaaattgcaataacaagaggagaaa |
27771979 |
T |
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| Q |
158 |
aatttggacttgaatcttcatcaggg |
183 |
Q |
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| T |
27771980 |
aatatggttttgaatcatcatcaggg |
27772005 |
T |
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