View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_high_29 (Length: 208)
Name: NF4067_high_29
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_29 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 40765147 - 40764958
Alignment:
| Q |
19 |
acttcacctctgttaggtatctgcatatcataacccaaaggcatgagatgaaacaacacaacttaataagaggagtgataagctggcttggtggttacat |
118 |
Q |
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| T |
40765147 |
acttcacctctgttaggtatctgcatatcataacccaaaggcatgagatgaaacaacacaacttaataagaggagtgataagctggcttggtggttacat |
40765048 |
T |
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| Q |
119 |
agggcagagcagcaaggactatggttcaactccacacattcaaaaaagtaacaaccaacatttatcattgaagaaaaaacacaatacaac |
208 |
Q |
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| T |
40765047 |
agggcagagcagcaaggaccatggttcaactccacacattcactaaagtaacaaccaacatttatcattgaagaaaaaacacaatacaac |
40764958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 42912588 - 42912539
Alignment:
| Q |
150 |
ccacacattcaaaaaagtaacaaccaacatttatcattgaagaaaaaaca |
199 |
Q |
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| T |
42912588 |
ccacacattcacaaaagtaacaaccaacatttatcattaaagaaaaaaca |
42912539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 42912709 - 42912677
Alignment:
| Q |
19 |
acttcacctctgttaggtatctgcatatcataa |
51 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
42912709 |
acttaacctctgttaggtatctgcatatcataa |
42912677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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