View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4067_high_3 (Length: 594)
Name: NF4067_high_3
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 40764953 - 40764368
Alignment:
| Q |
1 |
aaaagtaacaaccaacatttatcaatagagaaaaatcacaatacgataagaacaagaacttgaaaaaacaactgtagaagtacctttcatgctcagaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764953 |
aaaagtaacaaccaacatttatcaatagagaaaaaacacgatacgataagaacaagaacttgaaaaaacaactgtagaagtacctttcatgctcagaagc |
40764854 |
T |
|
| Q |
101 |
taaatcaattccccatgttacttcattctcaaattccgtaccattcttcacagcttcgtccagtatttccacagcttctgtatatgtaagtcgaatgaag |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764853 |
taaatcaattccccattttacttcattctcaaattccgtaccattcttcacagcttcttccagtatttccacagcttctgtatatgtaagtcgaatgaag |
40764754 |
T |
|
| Q |
201 |
ggggtggaggcaaccattttcaaacgatcaatgcaacctttgtcagccataaattccatatcctcaaggcagttgtcgagtaaccactgacacaaaaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764753 |
ggggtggaggcaaccattttcaaacgatcaatgcaacctttgtcagccataaattccatatcctcaaggcagttgtcgagtaaccactgacacaaaaatt |
40764654 |
T |
|
| Q |
301 |
tcacatatgcctcggcgcacttcatatcatcctacacaataatgcagataataagttattctttctgccacaacaaaagcaaaagcaccaaccataggag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40764653 |
tcacatatgcctcggcgcacttcatatcatcctacacaataatgcagataataagttattctttctgccacaacaaaagcaaaagcaccaaccataggag |
40764554 |
T |
|
| Q |
401 |
taggagtgaagttggcagttcaagattgcacgcactagaaaaataagtttattaccataaaaaacaaagtatttgaattggcattcagctgataatgtgg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40764553 |
taggagtgaagttggcagttcaagattgcacgcactaaaaaaataagtttattaccctaaaaaacaaagtatttgaattggcattcagctgataatgggg |
40764454 |
T |
|
| Q |
501 |
ttaatagtgactaatttgatagggagaaaggtgtgagaaaacattgtatttcaaaaaacttcaaacagctatagatgagaataatc |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40764453 |
ttaatagtgactaatttgatagggagaaaggtgtgagaaaacattgtatttcaaaaaacttcaaacagctatcgatgagaataatc |
40764368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 42912576 - 42912038
Alignment:
| Q |
1 |
aaaagtaacaaccaacatttatcaatagagaaaaatcacaatacgataagaacaagaacttgaaaaaacaactgtagaagtacctttcatgctcagaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| || || | ||||||||| ||||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
42912576 |
aaaagtaacaaccaacatttatcattaaagaaaaaacaaaactc---aagaacaag---ttgaaaaaataactacagaagtacctttcatgctctgaagc |
42912483 |
T |
|
| Q |
101 |
taaatcaattccccatgttacttcattctcaaattccgtaccattcttcacagcttcgtccagtatttccacagcttctgtatatgtaagtcgaatgaag |
200 |
Q |
| |
|
|| ||| ||||||||| |||||| |||||||||| | ||||||||| ||||| ||| |||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42912482 |
tagatcgattccccattctacttccttctcaaatttcttaccattctgcacagattcttccaatatttccacggcttctgtatatgtaagtcgaatgaag |
42912383 |
T |
|
| Q |
201 |
ggggtggaggcaaccattttcaaacgatcaatgcaacctttgtca---------gccataaattccatatcctcaaggcagttgtcgagtaaccactgac |
291 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
42912382 |
ggggttgaggcaaccattttcaaacgatcaatgcaacctttatcaaacttgtcggccataaattccatatcctcaaggcagttgtcaagtaaccaccgac |
42912283 |
T |
|
| Q |
292 |
acaaaaatttcacatatgcctcggcgcacttcatatcatcctacacaataatgcagataataagttattctttctgccacaacaaaagcaaaagcaccaa |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
42912282 |
acaaaaatttcacatatgcctcggcgcacttcatatcatcctacacaataatgcaaatattaaattatt-gttctgccacagcaaaagcaaaagcaccaa |
42912184 |
T |
|
| Q |
392 |
ccataggagtaggagtgaagttggcagttcaagattgcacgcactagaaaaataagtttattaccataaaaaacaaagtatttgaattggcattcagctg |
491 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| || ||||| | |
|
|
| T |
42912183 |
ccataggagtaggggtgaagttggcagttcaagatt----gcactagaaaaataagtttattaccctaaaaaac--agtatttgaattgacactcagccg |
42912090 |
T |
|
| Q |
492 |
ataatgtggttaatagtgactaatttgatagggagaaaggtgtgagaaaaca |
543 |
Q |
| |
|
||||||||||||||| | ||||||||||| | |||| |||||||||||| |
|
|
| T |
42912089 |
ataatgtggttaataacaaataatttgatagcgttaaagatgtgagaaaaca |
42912038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University