View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_high_5 (Length: 438)
Name: NF4067_high_5
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 2866291 - 2866714
Alignment:
| Q |
1 |
aaagcaattggattaactaaaactggattaaacattttgaaactctataaagaggttcaatttagtcacgattgaagtgtgatacgattgtgagaaaacc |
100 |
Q |
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| T |
2866291 |
aaagcaattggattaactaaaactggattaaacattttgaaactctataaagaggttcaatttagtcacgattgaagtgtgatacgattgtgagaaaacc |
2866390 |
T |
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| Q |
101 |
ctaatattagcttgagtaaagaattttagtcattgaaacacaataataataacgccaaaatgaaagtgaagcatcatggttgcttgcttatttgggtaag |
200 |
Q |
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| T |
2866391 |
ctaatattagcttgagtaaagaattttagccattgaaacacaataataataacgccaaaatgaaagtgaagcatcatggttgcttacttatttgggtaag |
2866490 |
T |
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| Q |
201 |
tgagggcattacaaacgcggtatcatcaaaattaagaaacgatgcattgtg-----attcaattcaattcaatgtgcttggtatatatctattcatataa |
295 |
Q |
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| T |
2866491 |
tgagggcattacaaacgcggtatcatcaaaattaagaaacgatgcattgtgattcaattcaattcaattcaatgtgcttggtatatatctattcatataa |
2866590 |
T |
|
| Q |
296 |
ccaatggattgttgactgctgtttctttattgttccattatatacaattttcctcccatttcaatgttgtgacttacgtgcctggtgaatcttatgagtt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2866591 |
ccaatggattgttgactgctgtttctttattgttccattatatacaattt---tcccatttcaatgttgtgacttacgtgcctggtgaatcttatgagtt |
2866687 |
T |
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| Q |
396 |
acttcttgttcgttagtttaagaaaat |
422 |
Q |
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| T |
2866688 |
acttcttgttcggtagtttaagaaaat |
2866714 |
T |
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