View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_high_6 (Length: 421)
Name: NF4067_high_6
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 5770663 - 5771061
Alignment:
| Q |
1 |
ctaagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagtgctattaacatgaactttgaaccctgctaatatttattctatctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5770663 |
ctaagtcaactttacaacattaccatgctcaaatatgcaaaatggaccaattagtgctattaacatgaactttgaaccctgctaatattttttctatctc |
5770762 |
T |
|
| Q |
101 |
cctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagcctctgcatannnnnnnaaaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
5770763 |
cctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagtctctgcatatttttttaaaaag |
5770862 |
T |
|
| Q |
201 |
agtaagaaagaaagatagatcatacatcggtaacttttatgcacagtttaaccccaatttatgtacataattacagaacatatggtaaaagagat--nnn |
298 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
5770863 |
agtaagaaagaaagatacatcatacatcagtaacttttatgcacagtttaaccccaatttgtgtacataattacagaacatgtggtaaaagagataaaaa |
5770962 |
T |
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| Q |
299 |
nnnnnnncattcaaattatcaaaagagacagaaagatacatcatgcatcagccttttttagggagtacatgagcaactttatgttatttatgatgcagc |
397 |
Q |
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| T |
5770963 |
aaaaaaactttcaaattatcaaaagagacagaaagatacatcatgcatcagccttttctagggagtacatgagcaactttatgttatttatgatgcagc |
5771061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 33867386 - 33866991
Alignment:
| Q |
1 |
ctaagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagtgctattaacatgaactttgaaccctgctaatatttattctatctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867386 |
ctaagtcaactttacaacattaccatgctcaaatatgcaaaatggaccaattagtgctattaacatgaactttgaaccctgctaatatttattctatctc |
33867287 |
T |
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| Q |
101 |
cctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagcctctgcatannnnnnnaaaaag |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |
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| T |
33867286 |
cctcctaaaagcaatgaaaacaaatggatcaggcatgcgttgatgtataaacaggaaaacaaatgaaccacaattagactctgcatatttttttaaaaag |
33867187 |
T |
|
| Q |
201 |
agtaagaaagaaagatagatcatacatcggtaacttttatgcacagtttaaccccaatttatgtacataattacagaacatatggtaaaagagatnnnnn |
300 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33867186 |
agtaagaaagaaagatacatcatacatcagtaacttttatgcacagtttaacaccaatttgtgtacataattacagaacatatggtaaaagagat-aaaa |
33867088 |
T |
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| Q |
301 |
nnnnncattcaaattatcaaaagagacagaaagatacatcatgcatcagccttttttagggagtacatgagcaactttatgttatttatgatgcagc |
397 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867087 |
aaaaactttcaaattatcaaaagagacagaaagatacatcatgcatcagccttttctagggagtacatgagcaactttatgttatttatgatgcagc |
33866991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 43904713 - 43904661
Alignment:
| Q |
3 |
aagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagt |
55 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
43904713 |
aagtcaactttacaacattaccatactcaaatatgcaaaatggaccaattagt |
43904661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 374
Target Start/End: Original strand, 5894049 - 5894221
Alignment:
| Q |
199 |
agagtaagaaagaaagatagatcatacatcggtaacttttatgcacagtttaaccccaatttatgtacataattacagaacatatggtaaaagagatnnn |
298 |
Q |
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||||||| ||||||||||| | ||||| || | |||||||||||||| ||||||| ||||| ||| |||||||||| ||||| ||||||||||||| |
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| T |
5894049 |
agagtaaaaaagaaagatacagcatacgtcagcaacttttatgcacaaattaaccctaatttgtgtgcataattacaaaacatgtggtaaaagagataca |
5894148 |
T |
|
| Q |
299 |
nnnnnnncattcaaattatcaaaagagacagaaagatacatcatgcatcagccttttttagggagtacatgagcaa |
374 |
Q |
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||| ||||||||||||||||||||||||||||||| |||| ||||| ||| || ||||||||||| |
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| T |
5894149 |
aagagt---ttccaattatcaaaagagacagaaagatacatcataattcagacttttctagtgaatacatgagcaa |
5894221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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