View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4067_high_7 (Length: 408)
Name: NF4067_high_7
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 44381657 - 44382052
Alignment:
| Q |
17 |
aggttttagatcatgataattgacaatctccatagcaccgacacttttcatcgaaagcatgtccgatatccaatgtcaatatccaacacctcgacacgac |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44381657 |
aggttttagatcatgataatagacaatctccatagcaccgacactattcatcgaaagcatgtccgatatccaatgtcaatatccaacacctcgacacaac |
44381756 |
T |
|
| Q |
117 |
attgacacatgtggttatagttaattatgttgttttctcaaattatagccgttgtggatgtgtgagtatcgtgtccagtatccgtgtttgtggccgtgct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44381757 |
attgacacatgtggttatagttaattatgttgttttctcaaattatagccgtcgtggatgtgtgagtatcgtgtccagtatccgtgtttgtggccgtgct |
44381856 |
T |
|
| Q |
217 |
tcatagtagacaacaaatgaggcttttatgtgttgat----tgcaatatgtggttggtattcaggttaaataactaatgaaactgatcccttcattccat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44381857 |
tcatagtagacaacaaatgaggcttttatgtgttgattgcatgcaatatgtggttggtattcaggttaaataactattgaaactgatcccttcattccat |
44381956 |
T |
|
| Q |
313 |
atctttggtagctaaaggtttttagaaacatggtaagaaatgttgtatatttgtactgcaatacctttaaatttataattaattttacaaattctc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44381957 |
atctttggtagctaaaggtttttagaaacatgataagaaatgttgtatatttgtactgcaatacctttaaatttataattaattttacaaattctc |
44382052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University