View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_high_8 (Length: 350)
Name: NF4067_high_8
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 1720669 - 1720332
Alignment:
| Q |
1 |
tctgtttgcgcatatgtattgcaatggaattgggtttaacagtaccacgttactcggtgttttatcttctttgaatcattgcatgagtacttcggatgac |
100 |
Q |
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| T |
1720669 |
tctgtttgcgcatatgtattgcaatggaattaggtttaacagtaccacgttactcggtgttttatcttctttgaatcattgcatgagtacttcggatgac |
1720570 |
T |
|
| Q |
101 |
atcaacaacacacatcatctgaagaactgttttcaattacactgtctcacagttaaaagtggtcttatttcagaagttgaagtggtaactgcattggtaa |
200 |
Q |
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| T |
1720569 |
atcaacaacacacatcatctgaagaactgttttcaattacactgtctcacagttaaaagtggtcttatttcagaagttgaagtggtaactgcattggtaa |
1720470 |
T |
|
| Q |
201 |
aatcctatgcagacctagggggtcacatttctgactgttttaagctcttccttgatacaagcggagaacatgatattgtgtcatggactgctattatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1720469 |
aatcctatgcagacctagggggtcacatttctgactgttttaagctcttccttgatacaagcggtgaacatgatattgtgtcatggactgctattatttc |
1720370 |
T |
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| Q |
301 |
tgtgtttgcggagcgcgatcctgagcaagcattccttc |
338 |
Q |
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||||||||| |||||||||||||||||||| ||||||| |
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| T |
1720369 |
tgtgtttgcagagcgcgatcctgagcaagctttccttc |
1720332 |
T |
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