View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_high_9 (Length: 339)
Name: NF4067_high_9
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_high_9 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 654984 - 655321
Alignment:
| Q |
1 |
ttgctgcacaccaatgttcctcagttggagatgacatatatctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaa |
100 |
Q |
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| T |
654984 |
ttgctgcacaccaatgttcctcagttggagatgacatatatctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaa |
655083 |
T |
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| Q |
101 |
gcttccaacaacttgcttgaacatggttgaatcgatcttggttcccttctcatccttgaaaagccttgttcctggtacaataggatttccaactggtttg |
200 |
Q |
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| T |
655084 |
gcttccaacaacttgcttgaacatggttgaatcgatcttggttcccttctcatccttggaaagccttgtgcctggtacaataggatttccaactggtttg |
655183 |
T |
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| Q |
201 |
ctatcagacatgccaaaccttgccagcacttctctcgcatactttctttgacacataaatattccctttgaattatgtataatttccatgccaagaaaat |
300 |
Q |
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| T |
655184 |
ctatcagacatgccaaaccttgccagcacttctctcgcatactttctttgacacataaatattccctttgaattctgtataatttccatgccaagaaaat |
655283 |
T |
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| Q |
301 |
agctcatctttaccacgacctgacatgtcaaattcatgc |
339 |
Q |
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| T |
655284 |
agctcatctttccca-aatctgacatgtcaaattcatgc |
655321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 14247327 - 14247246
Alignment:
| Q |
42 |
ctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaagcttccaacaacttgcttgaaca |
123 |
Q |
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| T |
14247327 |
ctgcttattaaactaacaccaaacatcatgtcaggtctagttacagtcaagtacatgaggcttccaaccacttgcttgaaca |
14247246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 655 - 736
Alignment:
| Q |
42 |
ctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaagcttccaacaacttgcttgaaca |
123 |
Q |
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| T |
655 |
ctgcttattaaactaacaccaaacatcatgtcaggtctagttacagtcaagtacatgaggcttccaaccacttgcttgaaca |
736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 6099 - 6180
Alignment:
| Q |
42 |
ctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaagcttccaacaacttgcttgaaca |
123 |
Q |
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| T |
6099 |
ctgcttattaaactaacaccaaacatcatgtcaggtctagttacagtcaagtacatgaggcttccaaccacttgcttgaaca |
6180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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