View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_low_1 (Length: 781)
Name: NF4067_low_1
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 641; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 17 - 767
Target Start/End: Complemental strand, 1021843 - 1021089
Alignment:
| Q |
17 |
aacatgttgtagaacgattctgatgatgtatcggattctggattttccagtttgtgattcggcggttgagaacgttgccggaaatattcggagtttggtg |
116 |
Q |
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| T |
1021843 |
aacatgttgtagaacgattctgatgatgtatcggattctggattttccagtttgtgattcggcggttgagaacgttgccggaaatattcggagtttggtg |
1021744 |
T |
|
| Q |
117 |
gagaaggaggaggttgaaaattttcccaattccaaacagaagaagtttcagaagctgttgattcattttgatgcgcggttggaatgaaccagttcggaaa |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021743 |
gagaaggaggaggttgaaaattctcccaattccaaacagaagaagtttcagaagctgttgattcattttgatgcgcggttggaatgaaccagttcggaaa |
1021644 |
T |
|
| Q |
217 |
ctcgcttctcggcgttgaacaaacgcttgaatcggaaagaatgtgaggaagcttcaccggaattttccggcgacgtatttcagaaactgtacggagtttt |
316 |
Q |
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| T |
1021643 |
atcgcttctcggcgttgaacaaacgcttgaatcggaaagaatgtgaggaagcttcaccggaattttccggcgacgtatttcagaaactgtacggagtttt |
1021544 |
T |
|
| Q |
317 |
gtgtttgttacggcggaaggagtaggaggaggtggcggtgtctgacaagttttaactgtgttgatgaaaacagcgggaatgtcgtcggagacggcgagag |
416 |
Q |
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| T |
1021543 |
gtgtttgttacggcggaaggagtaggaggaggtggcggtgtctgacaagttttaactgtgttgatgaaaacagcgggaatgtcgtcggagacggagagag |
1021444 |
T |
|
| Q |
417 |
gttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttacagtaatcagaatgagccgctgcgaggtagtggcgagcgtaaagtgc |
516 |
Q |
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| T |
1021443 |
gttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttacagtaatcagaatgagccgctgcgaggtagtggcgagcgtaaagtgc |
1021344 |
T |
|
| Q |
517 |
ttccttcatgagacggcggcgttctttgcaccgtcgtaccgtttcttcgttgtcgagtttagacaccgtacaacccattgtttcaggtggtatatatata |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
1021343 |
ttccttcatgagacggcggcgttctttgcaccgtcgtaccgtttcttcgttgtcgagtttagacacagtgcaacccattgtttcaggtggtatatatata |
1021244 |
T |
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| Q |
617 |
ccgta-----------tatttgaacgtgtgtatgcgtatattaaacaaaaacaaatgttgaagaaggttttgaagggaaac-aagaacttgaaaaac-aa |
703 |
Q |
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| T |
1021243 |
ccgtatattatacacgtatttgaacgtctgtatgcgtatattaaacaaaaacaaatgttgaagaaggttttgaagggaaacaaagaacttgaaaaacaaa |
1021144 |
T |
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| Q |
704 |
gtgcaagtgttagttaatctgaagtgctatgatatctaggttggttaggtttattgaaatgatg |
767 |
Q |
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| T |
1021143 |
gtgcaagt----gttaatctgaagtgc-----tatctaggttggttaggtttactgaagtgatg |
1021089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 198 - 484
Target Start/End: Complemental strand, 4971014 - 4970737
Alignment:
| Q |
198 |
gaatgaaccagttcggaaactcgcttctcggcgttgaacaaacgct---------tgaatcggaaagaatgtgaggaagcttcaccggaattttccggcg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||| |
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| T |
4971014 |
gaatgaaccagttcggaaactcgcttctcggcgttgaacaaatgctacaaatgcttgaattggaaagaatgtgaggaagcttca------------ggcg |
4970927 |
T |
|
| Q |
289 |
acgtatttcagaaactgtacggagttttgtgtttgttacggcggaaggagtaggaggaggtggcggtgtctgacaagttttaactgtgttgatgaaaaca |
388 |
Q |
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|| | ||||||||| ||||| ||||||||| ||||||| | || |||| ||||||||||| | | |||||| |||||||||| |||||| |
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| T |
4970926 |
acatgtttcagaaaatgtacagagttttgtagttgttactgtggctggag------gaggtggcggttgtttatgagtttttactgtgttgacgaaaacg |
4970833 |
T |
|
| Q |
389 |
gcgggaatgtcgtcggagacggcgagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttacagtaatcagaatga |
484 |
Q |
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| T |
4970832 |
gcgggaatgtcgtcgaagacggcgagaggttcactggcagcgaaggtggagagtgcggaaccggtgaggcgaagagagttatagtaatcagaatga |
4970737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 178 - 484
Target Start/End: Original strand, 6344803 - 6345091
Alignment:
| Q |
178 |
ttcattttgatgcgcggttggaatgaaccagttcggaaactcgcttctcggcgttgaacaaacgcttgaatcggaaagaatgtgaggaagcttcaccgga |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||| ||||||||||||||||| |
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| T |
6344803 |
ttcattttgatgcgcggttggaatgaaccagttcggaaactcgcttctcgacattgaacaaatgcttgaatcagaaaaaatgtgaggaagcttca----- |
6344897 |
T |
|
| Q |
278 |
attttccggcgacgtatttcagaaactgtacggagttttgtgtttgttacggcggaaggagtaggaggaggtggcggtgtctgacaagttttaactgtgt |
377 |
Q |
| |
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|||||| | ||||||||| ||||| ||||||||| ||||||||| || |||| |||||||| || ||| |||||| ||||||| |
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| T |
6344898 |
-------ggcgacatgtttcagaaaatgtacagagttttgtagttgttacggtggctggag------gaggtggctgttgttgatgagtttttactgtgt |
6344984 |
T |
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| Q |
378 |
tgatgaaaacagcgggaatgtcgtcggagacggcgagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttacagtaatc |
477 |
Q |
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||| |||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6344985 |
tgacgaaaacggcgggaatgtcgtcggagacgacgagaggttcactggcggcgaaggtggagagtgcggaaccggtgaggcgaagagagttacagtaatc |
6345084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 376 - 567
Target Start/End: Original strand, 31344534 - 31344725
Alignment:
| Q |
376 |
gttgatgaaaacagcgggaatgtcgtcggagacggcgagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttacagtaa |
475 |
Q |
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|||||||||||| |||||| ||| || || |||| |||||||||||||| ||||||||||||||| |||| |||||||| || || || ||||| |
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| T |
31344534 |
gttgatgaaaacggcgggagtgttatcagaaacggagagaggttcaccggaggcgaaagtggagagggcggtgccggtgagacggagggaacggcagtag |
31344633 |
T |
|
| Q |
476 |
tcagaatgagccgctgcgaggtagtggcgagcgtaaagtgcttccttcatgagacggcggcgttctttgcaccgtcgtaccgtttcttcgtt |
567 |
Q |
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|| || ||||| || ||||||| || ||||| || | ||||| ||||| |||||||| || |||||||||||||| || || |||||||| |
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| T |
31344634 |
tcggagtgagcagcggcgaggtgatgacgagcatagacagcttctttcataagacggcgacggtctttgcaccgtcgcactgtatcttcgtt |
31344725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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