View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_low_13 (Length: 311)
Name: NF4067_low_13
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 39728762 - 39728591
Alignment:
| Q |
15 |
aatactcaatagtgtacattgcatcatgcaaagtacgaatgtgaattgtgaaggtttattaaggaatgataaaaataaggttcaattcttcatcactaag |
114 |
Q |
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| T |
39728762 |
aatactcaatagtgtacattgcattatgcaaagtacgaatgtgaattgtgaaggtttattaaggaatgataaaaataaggttcaattcttcatcactaag |
39728663 |
T |
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| Q |
115 |
ttttccctatctacgtggtcatacacaaatcaaacacatgcaccaatacactttattgtttatgtttatatt |
186 |
Q |
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| T |
39728662 |
ttttccctatctacgtggtcatacacaaatcgaacacatgcaccaatacactttattgtttatgtttatatt |
39728591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 39728577 - 39728451
Alignment:
| Q |
170 |
ttgtttatgtttatattgttgaattaaaaatatgcaatatgatcttaggaaaatagatagtgtatagctgcatcggtccaagttgttgttcccatcatta |
269 |
Q |
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| T |
39728577 |
ttgtttatgtttatatttttgaattaaaaatatgcaatatgatcttaggaaaatagatagtgtatagctgcatcggtccaagttgttgttcccatcatta |
39728478 |
T |
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| Q |
270 |
ttttcttattgggttggtttgatgcac |
296 |
Q |
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| T |
39728477 |
ttttcttattgggttggtttgatgcac |
39728451 |
T |
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