View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_low_19 (Length: 286)
Name: NF4067_low_19
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 24358384 - 24358658
Alignment:
| Q |
1 |
aaattactctcttggacatggttgcttggtggtgtttgaatatggaggaacttccaagtttgatgtacacatatttgaccggaatgcagtagaaatagat |
100 |
Q |
| |
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||||||||||||||||||||| | ||||| |||||||||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
24358384 |
aaattactctcttggacatggctctttggttgtgtttgaatataaaagaacttccaagtttgatgtacacatttttggccggaatgcagtagaaatagat |
24358483 |
T |
|
| Q |
101 |
tattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
24358484 |
tattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggacgaatggcttaattggaagaagg |
24358583 |
T |
|
| Q |
201 |
ctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttc |
274 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
24358584 |
ctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattttc |
24358658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 24369737 - 24370014
Alignment:
| Q |
1 |
aaattactctcttggacatggttgcttggtggtgtttgaatatggaggaacttccaagtttgatgtacacatatttgaccggaatgcagtagaaatagat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||| | ||||||| |||||||||| |
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| T |
24369737 |
aaattactctcttggacatggttgcttggtggtgtttgaatataaaggaactttcaagtttgatgtagtaatacttggcaagaatgcattagaaatagac |
24369836 |
T |
|
| Q |
101 |
tatt---cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaaga |
197 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24369837 |
tatgatacttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaaga |
24369936 |
T |
|
| Q |
198 |
aggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttc |
274 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
24369937 |
aggctagacaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttc |
24370014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 24364910 - 24364633
Alignment:
| Q |
1 |
aaattactctcttggacatggttgcttggtggtgtttgaatatggaggaacttccaagtttgatgtacacatatttgaccggaatgcagtagaaatagat |
100 |
Q |
| |
|
|||||||||||||| |||||| || |||||| ||||||||||| |||||||||||||||||||||| ||| ||| || ||||||||||||||||||| |
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| T |
24364910 |
aaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaatagat |
24364811 |
T |
|
| Q |
101 |
tat---tcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaaga |
197 |
Q |
| |
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||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24364810 |
tatgattcttcaagtgacactaatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaaga |
24364711 |
T |
|
| Q |
198 |
aggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttc |
274 |
Q |
| |
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|||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24364710 |
aggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttc |
24364633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 24354722 - 24354974
Alignment:
| Q |
1 |
aaattactctcttggacatggttgcttggtggtgtttgaatatggaggaacttccaagtttgatgtacacatatttgaccggaatgcagtagaaatagat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| |||| ||| |||||||||||||||||| ||| || |||||||||||||||||| |
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| T |
24354722 |
aaattactctcttggacatggttgtttggtggtgttcaaatataaaggagattcaaagtttgatgtacacatacttggccagaatgcagtagaaatagac |
24354821 |
T |
|
| Q |
101 |
tatt---cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaaga |
197 |
Q |
| |
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||| |||||||||| || ||||||| || | || ||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||| |
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| T |
24354822 |
tatgatccttcatgtgatggttatgatgagaaaaatgatattgatcatagtgatgatgag---tctgttgagattttggaagaatggcttaatcagaaga |
24354918 |
T |
|
| Q |
198 |
aggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgaggt |
253 |
Q |
| |
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| |||| ||||||||||||||| |||||||||||||| |||||||||||| ||||| |
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|
| T |
24354919 |
atgctagacaaagatcacctttcgtttctcctcgacctcataagaaagttagaggt |
24354974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 24344450 - 24344634
Alignment:
| Q |
1 |
aaattactctcttggacatggttgcttggtggtgtttgaatatggaggaacttccaagtttgatgtacacatatttgaccggaatgcagtagaaatagat |
100 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||| ||||||||| || ||||||||| ||| ||| |||||||||||||||||||| |
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| T |
24344450 |
aaattactctcttggacatggctctttggtggtgtttgaatataaaggaacttcgaaatttgatgtagtaatacttggtcggaatgcagtagaaatagac |
24344549 |
T |
|
| Q |
101 |
tatt---cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggc |
185 |
Q |
| |
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||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |
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| T |
24344550 |
tatgatacttcatgtgacactgatgatgaaaatgacaatgttggtcatagtgatgatg---aatcagttgagattttagatgaatggc |
24344634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 24313887 - 24314000
Alignment:
| Q |
1 |
aaattactctcttggacatggttgcttggtggtgtttgaatatggaggaacttccaagtttgatgtacacatatttgaccggaatgcagtagaaatagat |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||| ||||| ||||||||| ||||||||||||| |||| |||||| ||||||| ||||||||||| |
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|
| T |
24313887 |
aaattactctcttggacatgggtgtttggtaatgttcaaatataaaggaacttcaaagtttgatgtactcatacttgaccagaatgcactagaaatagat |
24313986 |
T |
|
| Q |
101 |
tattcttcatgtga |
114 |
Q |
| |
|
|||||||||||||| |
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|
| T |
24313987 |
tattcttcatgtga |
24314000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 24351637 - 24351880
Alignment:
| Q |
1 |
aaattactctcttggacatggttgcttggtggtgtttgaatatggaggaacttccaagtttgatgtacacatatttgaccggaatgcagtagaaatagat |
100 |
Q |
| |
|
|||||||||||| |||||| || |||||||||||| ||||| ||||||||||||||||||||||| ||| ||| ||||| || |||||||| |
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| T |
24351637 |
aaattactctctacaacatggatgtttggtggtgtttaaatataaaggaacttccaagtttgatgtactaatacttggtaataatgcggttgaaatagac |
24351736 |
T |
|
| Q |
101 |
tat---tcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaaga |
197 |
Q |
| |
|
||| ||||||||||||| |||||||||||||| ||||||| ||| | |||| ||| ||||| ||||||||| |||||||||| |||| ||||| |
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|
| T |
24351737 |
tatgattcttcatgtgacactgatgatgaaaatggaaatgttggtcaaa---atgacgatgaatcacttgagatttcagatgaatggcgaaatcagaaga |
24351833 |
T |
|
| Q |
198 |
aggctaaacaaagatcaccttttgtttctcctcgaccacataagaaa |
244 |
Q |
| |
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|||| | |||| |||| || ||| ||||||||||||||||||| |
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|
| T |
24351834 |
ttgctagaaaaaggccaccattattttatcctcgaccacataagaaa |
24351880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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