View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_low_20 (Length: 284)
Name: NF4067_low_20
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_low_20 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 2 - 279
Target Start/End: Original strand, 655302 - 655579
Alignment:
| Q |
2 |
ctgacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaat |
101 |
Q |
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| T |
655302 |
ctgacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaat |
655401 |
T |
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| Q |
102 |
taggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctatgcgactggac |
201 |
Q |
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| T |
655402 |
taggattttacctctctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctatgcgactgtac |
655501 |
T |
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| Q |
202 |
catgctcgcggagcctgtttcagtccgtctgaagctttatttagcttatataccttttcttcttctcccttcatctca |
279 |
Q |
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| T |
655502 |
catgctcgcggagcctgtttcagtccgtataaagctttatttagcttatataccttttcttcttctcccttcttctca |
655579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 14247031 - 14246936
Alignment:
| Q |
21 |
catcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
116 |
Q |
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| T |
14247031 |
catcattgagtttttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
14246936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 11850614 - 11850427
Alignment:
| Q |
4 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
103 |
Q |
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| T |
11850614 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcccggtatatattaaatcatctacataaagacttactatta |
11850515 |
T |
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| Q |
104 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
191 |
Q |
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| T |
11850514 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
11850427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 5877310 - 5877123
Alignment:
| Q |
4 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
103 |
Q |
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|||||||||||||| ||||||||| | |||||||| ||||| ||| || ||||||||| ||||| || |||||||| || |||| ||| || |||| |
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| T |
5877310 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcctggtatatattaaatcatctacataaacacttactatta |
5877211 |
T |
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| Q |
104 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
191 |
Q |
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| T |
5877210 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
5877123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 964 - 1046
Alignment:
| Q |
34 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
116 |
Q |
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| T |
964 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
1046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 6408 - 6490
Alignment:
| Q |
34 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
116 |
Q |
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| T |
6408 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
6490 |
T |
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