View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_low_23 (Length: 248)
Name: NF4067_low_23
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_low_23 |
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| [»] scaffold1088 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 75 - 242
Target Start/End: Original strand, 22194762 - 22194929
Alignment:
| Q |
75 |
aaaagaaaaagaaatatgaaagttatgcaaactttgcacaaaattacaatctatataaaacatacctttgttgagaaatctttagtatcttccactttaa |
174 |
Q |
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| T |
22194762 |
aaaagaaaaagaaatatgaaagttatgcaaactttgcacaaaattacaatctatataaaacatacctttgttgagaaatctttagtatcttccacagtaa |
22194861 |
T |
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| Q |
175 |
tatgccatgttcccttggagccaaaaggagagccattaccactccataattcccatgacttcatttct |
242 |
Q |
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| T |
22194862 |
tatgccatgttccctttgagccaaaaggagagccattaccactccataattcccatgacttcatttct |
22194929 |
T |
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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 22409659 - 22409562
Alignment:
| Q |
145 |
ttgagaaatctttagtatcttccactttaatatgccatgttcccttggagccaaaaggagagccattaccactccataattcccatgacttcatttct |
242 |
Q |
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| T |
22409659 |
ttgagaaatccttagtatcttccacagtaatatgccatgttcccttggatccaaaactagtgccattaccactccataattcccatgacttcatttct |
22409562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 22194375 - 22194443
Alignment:
| Q |
9 |
catatttcccttatttatctctaatgtttactttttccaacacatttgtaactatgaaatgaaccaaaaa |
78 |
Q |
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| T |
22194375 |
catatttcccttatttatctttaatgtttacttttt-caacacatttgtaactatgaaatgaacaaaaaa |
22194443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1088 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1088
Description:
Target: scaffold1088; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 2839 - 2706
Alignment:
| Q |
108 |
ttgcacaaaattacaatctatataaaacatacctttgttgagaaatctttagtatcttccactttaatatgccatgttcccttggagccaaaaggagagc |
207 |
Q |
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| T |
2839 |
ttgcacaaaattacaattcatatata-catacctcggtggtgaaattcttagtatcttctacggttagatgccaagttcccttagaaccaaatggacttc |
2741 |
T |
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| Q |
208 |
cattaccactccataattcccatgacttcatttct |
242 |
Q |
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| T |
2740 |
cattaccactccacaattcccatgtcttcatttct |
2706 |
T |
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