View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_low_24 (Length: 248)
Name: NF4067_low_24
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 9648285 - 9648500
Alignment:
| Q |
20 |
ttaagttccttttggcattagcattgcaattcaagaggagaatctatgccacattttttagtgtttgcttaaattctgcttggtatatgtggaattcatg |
119 |
Q |
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| T |
9648285 |
ttaagttccttttggcattagcattgcaattcaagaggagaatctacgccacattttttagtgtttgcttaaattctgcttggtatatgtggaattcatg |
9648384 |
T |
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| Q |
120 |
tcatgaattctgtttcgtttgtgtattttgacagctttgatattgtaagagacacctcgggcttagttcgaaaagaatttccacacacggtgtatttcat |
219 |
Q |
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| T |
9648385 |
tcatgaattctgtttcgtttgtgtattttgacagctttgatattgtaagagacacctcgggcttagttcgaaaagaatttccacacacggtgtatttcat |
9648484 |
T |
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| Q |
220 |
ggcagggacacaggtt |
235 |
Q |
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| T |
9648485 |
ggcagggacacaggtt |
9648500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 34738928 - 34738809
Alignment:
| Q |
116 |
catgtcatgaattctgtttcgtttgtgtattttgacagctttgatattgtaagagacacctcgggcttagttcgaaaagaatttccacacacggtgtatt |
215 |
Q |
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| T |
34738928 |
catgtcatgatttattttttgtttggggattttgacagcttcgatattttacgtgacaccatgggtttagttcgaacagaatttccacacacagtgtatt |
34738829 |
T |
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| Q |
216 |
tcatggcagggacacaggtt |
235 |
Q |
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| T |
34738828 |
tcattacagggacacaggtt |
34738809 |
T |
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