View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_low_25 (Length: 247)
Name: NF4067_low_25
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 11020143 - 11020384
Alignment:
| Q |
1 |
aaagtcattgtacagatggattatctctttgccattaaaatcattgaagatggtgagagtgttttacttatttttcatcatttgttatctcaggttaagg |
100 |
Q |
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| T |
11020143 |
aaagtcattgtacaaatggattatctctttgccattaaaatcattgaagatggtgagagtgttttacttatttttcatcatttgttatctcaggttaagg |
11020242 |
T |
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| Q |
101 |
tgttatgtcatatgttatctgattttcgctgtcaatatgtttttcattgatttaatcaaatggctggctttgccaaatatgatcttagtcggcttgttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11020243 |
tgttatgtcatatgttatctgattttcgctgtcaatatgtttctcattgatttaatcaaatggctggctttgccaaatatgatcttagtcggcttgttcc |
11020342 |
T |
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| Q |
201 |
tttaaagatttttaattaagtttcggatttcctacctatgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11020343 |
tttaaagatttttaattaagtttcggatttcctacctttgct |
11020384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 31360809 - 31360974
Alignment:
| Q |
4 |
gtcattgtacagatggattatctctttgccattaaaatc-attgaagatggtgagagtgttttacttatttttcatcatttgttatctcaggttaaggtg |
102 |
Q |
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| T |
31360809 |
gtcattgtataaagggattatctatttgccattaaaatcgattgaagatggtgcgggtggtttacgtgttttacataatttgttgtttcatattaaggtg |
31360908 |
T |
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| Q |
103 |
ttatgtcatatgttatctgattttcgctgtcaatatgtttttcattgatttaatcaaatggctggc |
168 |
Q |
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| T |
31360909 |
ttatgttctatgtcgcctggttttcgttgtcaacatgtttctcgttaatttaatcaagtggttggc |
31360974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 5061367 - 5061238
Alignment:
| Q |
2 |
aagtcattgtacagatggattatctctttgccattaaaatcattgaagatggtgagagtgttttacttatttttcatcatttgttatctcaggttaaggt |
101 |
Q |
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||||||||||||| | ||||| ||||||||||||| ||| |||||||||| || |||||||| | ||||| ||||||||||||||||||||| || |
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| T |
5061367 |
aagtcattgtacaaaaggatt--ctctttgccattagaattattgaagatgatgcgagtgtttatgtg--ttttcttcatttgttatctcaggttaaagt |
5061272 |
T |
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| Q |
102 |
gttatgtcatatgttatctgattttcgctgtcaa |
135 |
Q |
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| T |
5061271 |
gatatgtcatatgacgtttggttttcgctgtcaa |
5061238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 44080412 - 44080324
Alignment:
| Q |
26 |
tctttgccattaaaatcattgaagatggtgagagtgttttacttatttttcatcatttgtta-tctcaggttaaggtgttatgtcatat |
113 |
Q |
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| T |
44080412 |
tcttcgccattaaaatgattgaaaatggtgctagtgttttacatggttttcatcctttttttgtctcaagttaaggtgttatgtcatat |
44080324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 19996598 - 19996548
Alignment:
| Q |
36 |
taaaatcattgaagatggtgagagtgttttacttatttttcatcatttgtt |
86 |
Q |
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| T |
19996598 |
taaaatgattgaagatggtgtgagtgttttacatgtttttcgtcatttgtt |
19996548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 18991211 - 18991107
Alignment:
| Q |
5 |
tcattgtacagatggattatctctttgccattaaaatcattgaagatggtgagagtgttttacttatttttcatcatttgttatctcaggttaaggtgtt |
104 |
Q |
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|||||||||| || ||| ||||| |||||||||||| |||||||||||| |||||||| | ||||| ||||||| |||||||| || | ||||| |
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| T |
18991211 |
tcattgtacaaataaattctctctctgccattaaaatgattgaagatggtacaggtgttttatgtgttttttatcattttttatctcatatttacgtgtt |
18991112 |
T |
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| Q |
105 |
atgtc |
109 |
Q |
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||||| |
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| T |
18991111 |
atgtc |
18991107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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