View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4067_low_28 (Length: 238)
Name: NF4067_low_28
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_low_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 32451038 - 32450824
Alignment:
| Q |
3 |
gttcaaactggggctgctcttgctctccgtctcatttaagaatatgaattactctcttctctcttccttcacggtttttcctttctaatattatcaaagg |
102 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32451038 |
gttcaaactggggctgctctttctctccatctcatttaagaatatgaattactctcttctctctcccttcacggtttttcctttctaatattatcaaagg |
32450939 |
T |
|
| Q |
103 |
aa-gttcttgaatgttttcaattaccatacatctttggtcttcaaggaattatcaacaataattccactttattaccttgacccaaaaataaagaatgtt |
201 |
Q |
| |
|
|| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32450938 |
aaagctcttgaatgttttcaatcaccatacatctttggtcttcaaggaattatcaacaataattccactttattaccttgacccaaaaataaagaatgtt |
32450839 |
T |
|
| Q |
202 |
gaattcctcattact |
216 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32450838 |
gaattcctcattact |
32450824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 12932453 - 12932273
Alignment:
| Q |
40 |
aagaatatgaattactctcttctctcttccttcacggtttttcctttctaatattatcaaaggaa-gttcttgaatgtttt-caattaccatacatcttt |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
12932453 |
aagaatatgaattactctcttctctcttccttcacggtttttcctttctaatattatcaaaggaaagctcttgaatgtttttcaattaccatacatcttt |
12932354 |
T |
|
| Q |
138 |
ggtcttcaaggaattatcaacaataattccactttattaccttgacccaaaaataaagaatgttgaattcctcattactct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12932353 |
ggtcttcaaggaattatcaacaataattccactttattaccttgacccaaaaataaagaatgttgaatccctcattactct |
12932273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 52016403 - 52016541
Alignment:
| Q |
89 |
aatattatcaaaggaa-gttcttgaatgtt-ttcaattaccatacatctttggtcttcaaggaattatcaacaataattccactttattaccttgaccca |
186 |
Q |
| |
|
|||||||| ||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||| |||| || |||||| |||| |||||||| ||||| |
|
|
| T |
52016403 |
aatattattaaaggaaagctcttgaatgttattcaattaccatacatctttagtcttcaaggaatcatcatcagtaattcaacttgattaccttaaccca |
52016502 |
T |
|
| Q |
187 |
aaaataaagaatgttgaattcctcattactctctttgat |
225 |
Q |
| |
|
||||| | ||||| |||||||||| ||||||||||||| |
|
|
| T |
52016503 |
aaaatgaggaatgccgaattcctcagtactctctttgat |
52016541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 17543419 - 17543342
Alignment:
| Q |
108 |
cttgaatgtt-ttcaattaccatacatctttggtcttcaaggaattatcaacaataattccactttattaccttgaccc |
185 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||||||| |||| |||||||| |||| ||||||||| |||| |||| |
|
|
| T |
17543419 |
cttgaatgttattcaataaccatacatcttt-gtcttcaaagaatcatcaacaacaatttcactttattgccttaaccc |
17543342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 1193175 - 1193222
Alignment:
| Q |
122 |
attaccatacatctttggtcttcaaggaattatcaacaataattccac |
169 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
1193175 |
attaccatgcatctctggtcttcaaggaatcatcaacaacaattccac |
1193222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University