View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4067_low_29 (Length: 238)

Name: NF4067_low_29
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4067_low_29
NF4067_low_29
[»] chr3 (11 HSPs)
chr3 (18-238)||(24369394-24369628)
chr3 (69-146)||(24358061-24358138)
chr3 (69-135)||(24365190-24365256)
chr3 (174-238)||(24354549-24354613)
chr3 (174-238)||(24365019-24365083)
chr3 (188-238)||(24313727-24313777)
chr3 (184-238)||(24344287-24344341)
chr3 (188-238)||(24351478-24351528)
chr3 (178-238)||(24361906-24361966)
chr3 (69-106)||(24361778-24361815)
chr3 (181-233)||(24358219-24358270)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 24369394 - 24369628
Alignment:
Q  18 aactcaagaattttacattttagcactagaacttttcaaacatgc--------------gcattaatttcacatattttctgtttataatattagcacta 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||    
T  24369394 aactcaagaattttacattttagcactagaacttttcaaacatgcaacatctcatatatgcattaatttcacatattttctgtttataatattagcacta 24369493  T
Q  104 gaacttttcaactaaacaaaatattagcactataaattgtatttgacacctttttctaagtgaccaaattaaaggggttctttaatttttacagcaaata 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24369494 gaacttttcaactaaacaaaatattagcactataaattgtatttgacacctttttctaagtgaccaaattaaaggggttctttaatttttacagcaaata 24369593  T
Q  204 ccaagtaagtttacaaagagaaatggagttggtct 238  Q
    ||||||||||||||||||||| |||||||||||||    
T  24369594 ccaagtaagtttacaaagagacatggagttggtct 24369628  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 24358061 - 24358138
Alignment:
Q  69 atttcacatattttctgtttataatattagcactagaacttttcaactaaacaaaatattagcactataaattgtatt 146  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||||    
T  24358061 atttaacatattttctgtttacaatattagcactagaacttttcaacaaaacaaaatattggcactagaaattttatt 24358138  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 24365256 - 24365190
Alignment:
Q  69 atttcacatattttctgtttataatattagcactagaacttttcaactaaacaaaatattagcacta 135  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||    
T  24365256 atttaacatattttctgtttacaatattagcactagaacatttcaacaaaacaaaatattagcacta 24365190  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 24354549 - 24354613
Alignment:
Q  174 aaaggggttctttaatttttacagcaaataccaagtaagtttacaaagagaaatggagttggtct 238  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||| || | |||||||||||||    
T  24354549 aaaggggttctttaatttttacagaaaattccaaataagtttacaaggaaacatggagttggtct 24354613  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 24365083 - 24365019
Alignment:
Q  174 aaaggggttctttaatttttacagcaaataccaagtaagtttacaaagagaaatggagttggtct 238  Q
    |||| |||||||||||||||||||||| |||||| ||||||||| | || | |||||||||||||    
T  24365083 aaagaggttctttaatttttacagcaattaccaaataagtttactaggaaacatggagttggtct 24365019  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 24313727 - 24313777
Alignment:
Q  188 atttttacagcaaataccaagtaagtttacaaagagaaatggagttggtct 238  Q
    |||||||||||||||||||| ||| ||||||| |||| |||||||||||||    
T  24313727 atttttacagcaaataccaaataattttacaaggagacatggagttggtct 24313777  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 24344287 - 24344341
Alignment:
Q  184 tttaatttttacagcaaataccaagtaagtttacaaagagaaatggagttggtct 238  Q
    |||||||||||||| ||||||||  |||||||||||||| | |||||||||||||    
T  24344287 tttaatttttacagaaaataccacataagtttacaaagaaacatggagttggtct 24344341  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 24351478 - 24351528
Alignment:
Q  188 atttttacagcaaataccaagtaagtttacaaagagaaatggagttggtct 238  Q
    |||||||||||||||||||| ||| ||||||| |||| |||||||||||||    
T  24351478 atttttacagcaaataccaaataattttacaaggagatatggagttggtct 24351528  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 24361906 - 24361966
Alignment:
Q  178 gggttctttaatttttacagcaaataccaagtaagtttacaaagagaaatggagttggtct 238  Q
    ||||| ||||| |||||||| ||||||||| | ||||||||| |||| |||||||||||||    
T  24361906 gggttgtttaaattttacagaaaataccaaatgagtttacaaggagacatggagttggtct 24361966  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 24361778 - 24361815
Alignment:
Q  69 atttcacatattttctgtttataatattagcactagaa 106  Q
    |||||||||||||||||||||  |||||||||||||||    
T  24361778 atttcacatattttctgtttacgatattagcactagaa 24361815  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 24358219 - 24358270
Alignment:
Q  181 ttctttaatttttacagcaaataccaagtaagtttacaaagagaaatggagtt 233  Q
    ||||||||||||| ||||||||||||| ||||||||| | |||| ||||||||    
T  24358219 ttctttaattttt-cagcaaataccaaataagtttactaggagatatggagtt 24358270  T

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