View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_low_32 (Length: 211)
Name: NF4067_low_32
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 10125244 - 10125444
Alignment:
| Q |
1 |
catactaactagttacccgtgtctatgttgcagcctttggagttgacatgttacataccatcggctatatatactcaagacaagcagcacaagaactagg |
100 |
Q |
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| T |
10125244 |
catactaactagttacccgtgtctatgttgcagcctttggagttgacatgttacataccatcggctatatatactcaagacaagcagcacaagaactagg |
10125343 |
T |
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| Q |
101 |
gaaaaaggccctttatcttggagttccatttctggccgaatgggttcgtaataaaggacatttttggaaatcacagttaacagctgctaaaggtatgatg |
200 |
Q |
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| T |
10125344 |
gaaaaaggccctttatcttggagttccatttctggccgaatgggttcgtaataaaggacatttttggaaatcacagttaacagctgctaaaggtataatg |
10125443 |
T |
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| Q |
201 |
a |
201 |
Q |
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| T |
10125444 |
a |
10125444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 10118648 - 10118847
Alignment:
| Q |
3 |
tactaactagttacccgtgtctatgtt-gcagcctttggagttgacatgttacataccatcggctatatatactcaagacaagcagcacaagaactaggg |
101 |
Q |
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||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||| |
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| T |
10118648 |
tactaactagttatccgtgtctctgtttgcagagtttggagttgacatgttacataccacaggctatatatattcaaaccaagcagcacaagaactaggg |
10118747 |
T |
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| Q |
102 |
aaaaaggccctttatcttggagttccatttctggccgaatgggttcgtaataaaggacatttttggaaatcacagttaacagctgctaaaggtatgatga |
201 |
Q |
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| T |
10118748 |
aaaaatgccctttatctgggagtgccatttctggcagaatgggtttgcagtaagggacattattggaaatcacagtttacagctgctaaaggtataatga |
10118847 |
T |
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