View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_low_4 (Length: 517)
Name: NF4067_low_4
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 189 - 504
Target Start/End: Original strand, 10124952 - 10125267
Alignment:
| Q |
189 |
tgcaacacatggaacttcaaagcttgtctaacacctctcttcctgaaattttaaactgcattaactatgtcaaatagaggctataacgcggtgatttatg |
288 |
Q |
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| T |
10124952 |
tgcaacacatggaacttcaaagcttgtctaacacctctcttcctgaaattttaaactgcattaactatgtcaaatagaggctataacacagtgatttatg |
10125051 |
T |
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| Q |
289 |
tgtgccactaatgtctatataattgaacagattttgcgttatagcatgctactgtatcaaggatattaccatgtcaaatagagtctataacgcggtgaaa |
388 |
Q |
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| T |
10125052 |
tgtgccactaatgtctatataattgaacagattttgcgttatagcatgctactgtatcaaggatattaccatgtcaaatagagtctataacgcggtgaaa |
10125151 |
T |
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| Q |
389 |
tttaaacaaatttgttatcgttacgcagtacatagttttgttaaatagcagttataacgacacgatggcattgtattgtatcgacaatattacatactaa |
488 |
Q |
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| T |
10125152 |
tttaaacaaatttgttatcgttacgcagtacatagttttgttaaatagcagttataacgacacgatggcattgtattgtatcgacgatattacatactaa |
10125251 |
T |
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| Q |
489 |
ctagttacccgtgtct |
504 |
Q |
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| T |
10125252 |
ctagttacccgtgtct |
10125267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 10124753 - 10124925
Alignment:
| Q |
20 |
agtccaaaaaggaagggaagaaaagctagcaagatttctgaaggattttctcagccaatatgttcgcggtgaccaaaagggtttctaccagcgcgcagaa |
119 |
Q |
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| T |
10124753 |
agtccaaaaaggaagggaagaaaagctagcaagatttctgaaggattttctcagccaatatgttcgcggtgaccaaaagggtttctaccagcgcgcagaa |
10124852 |
T |
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| Q |
120 |
tctgaagcaagacggctttctcatgcaggttagtgaattctacatgcatttattggggccaagcacaattgca |
192 |
Q |
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| T |
10124853 |
tctgaagcaagacggctttctcatgcaggttagtgaattctacatgcatttattggggccaagcacaattgca |
10124925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 10118086 - 10118240
Alignment:
| Q |
27 |
aaaggaagggaagaaaagctagcaagatttctgaaggattttctcagccaatatgttcgcggtgaccaaaagggtttctaccagcgcgcagaatctgaag |
126 |
Q |
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| T |
10118086 |
aaagaaagggaagaaaagctagcaagattcttgaaagattttctcagccaatatgttcgtggtgaccaaaggggtttctaccagcgcgcaaaatctgaag |
10118185 |
T |
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| Q |
127 |
caagacggctttctcatgcaggttagtgaattctacatgcatttattggggccaa |
181 |
Q |
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| T |
10118186 |
caagacggctctctcatgcaggttagtgaattctacctgcatttcttggggccaa |
10118240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 10118419 - 10118494
Alignment:
| Q |
281 |
gatttatgtgtgccactaatgtctatataattgaacagattttgcgttatagcatgctactgtatcaaggatatta |
356 |
Q |
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| T |
10118419 |
gatttatgtgcgcaactagcgtctatataatcaaacatattttgctttatagcatgttattgtatcaaggatatta |
10118494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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