View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4067_low_8 (Length: 351)
Name: NF4067_low_8
Description: NF4067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4067_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 11020058 - 11019725
Alignment:
| Q |
1 |
catgaagattaatttataagnnnnnnntgttagttctttttatatttatttgataatattagcttcgaatatatcacatatagtttactagttttttata |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11020058 |
catgaagattaatttataagaaaaaaatgttagttctttttatatttatttgataataatagcttcgaatatatcacatatagtttactagttttttata |
11019959 |
T |
|
| Q |
101 |
taagttatgcatttgaaaattaatttattctttactaaattacacttttaatgccggtccctctataagttcaattcctgacaccgtccctatatgaatg |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11019958 |
taagttatgcatttgaaaattaatttattttttactaaattacacttttaatgccggtccctctataagttcaattcctgacaccgtccctatatgaatg |
11019859 |
T |
|
| Q |
201 |
gatacttgttattatatcggaaaacaaaagatgcaatccttaacctttgttgtggtgttactaatactgatattctcatacaatattgcagatggtgatg |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11019858 |
gatacttgttattatatcggaaaacaaaaaatgcaatccttaacctttgttgtggtgttactaatactgatattctcgtacaatattgcagatggtgatg |
11019759 |
T |
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| Q |
301 |
aacaacaagagtcatgttcaagaaggtgcggtgt |
334 |
Q |
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| T |
11019758 |
aacaacaagagtcatgttcaagaaggtgcggtgt |
11019725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 11009810 - 11009692
Alignment:
| Q |
216 |
atcggaaaacaaaagatgcaatccttaacctttgttgtggtgttactaatactgatattctcatacaatattgcagatggtgatgaacaacaagagtcat |
315 |
Q |
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| T |
11009810 |
atcggaaaaccaaaaatgccatccttaacccttgttgtggtgttactaatactgatattctcgtacaatgtagatggtgatgttgaacatcaagagtcat |
11009711 |
T |
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| Q |
316 |
gttcaagaaggtgcggtgt |
334 |
Q |
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||||||||||||||||||| |
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| T |
11009710 |
gttcaagaaggtgcggtgt |
11009692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 11035213 - 11035096
Alignment:
| Q |
217 |
tcggaaaacaaaagatgcaatccttaacctttgttgtggtgttactaatactgatattctcatacaatattgcagatggtgatgaacaacaagagtcatg |
316 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||| || || | | ||||||||||||| ||||| ||||| |
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| T |
11035213 |
tcggaaaacaaaaaatgtcttccttaacctttgttgtgctgttactaatactgatattctcgtataacaaagtgtatggtgatgaacaccaagactcatg |
11035114 |
T |
|
| Q |
317 |
ttcaagaaggtgcggtgt |
334 |
Q |
| |
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||| || |||||||||| |
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| T |
11035113 |
ttctcgatggtgcggtgt |
11035096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 10988599 - 10988557
Alignment:
| Q |
292 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgt |
334 |
Q |
| |
|
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| T |
10988599 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgt |
10988557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 36651191 - 36651148
Alignment:
| Q |
104 |
gttatgcatttgaaaattaatttattctttactaaattacacttt |
148 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| ||||| |
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| T |
36651191 |
gttatgcatttgaaaatttattt-ttctttactaaattatacttt |
36651148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 33248001 - 33248050
Alignment:
| Q |
92 |
ttttttatataagttatgcatttgaaaattaatttattctttactaaatt |
141 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| ||||| |||||||| |
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| T |
33248001 |
ttttttatataagttaagcatttgaaaatttattttttcttcactaaatt |
33248050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 39898960 - 39898997
Alignment:
| Q |
29 |
gttagttctttttatatttatttgataatattagcttc |
66 |
Q |
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||||||||||||||||||||||||| ||||||| |||| |
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| T |
39898960 |
gttagttctttttatatttatttgacaatattaacttc |
39898997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 36145185 - 36145245
Alignment:
| Q |
92 |
ttttttatataagttatgcatttgaaaattaat-ttattctttactaaattacacttttaa |
151 |
Q |
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|||||| |||||||| ||||||| ||| || || || |||||||||||||||||||||||| |
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| T |
36145185 |
ttttttttataagttctgcatttaaaagtttatatttttctttactaaattacacttttaa |
36145245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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