View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4068_high_4 (Length: 325)

Name: NF4068_high_4
Description: NF4068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4068_high_4
NF4068_high_4
[»] chr7 (5 HSPs)
chr7 (3-250)||(23527986-23528233)
chr7 (1-250)||(12533732-12533981)
chr7 (1-250)||(15830244-15830493)
chr7 (253-312)||(23527829-23527888)
chr7 (69-232)||(11532026-11532189)
[»] chr1 (3 HSPs)
chr1 (3-241)||(20516500-20516738)
chr1 (1-238)||(550686-550923)
chr1 (247-312)||(20516326-20516391)
[»] scaffold0139 (2 HSPs)
scaffold0139 (3-241)||(9229-9467)
scaffold0139 (253-312)||(9067-9126)
[»] scaffold0071 (2 HSPs)
scaffold0071 (6-241)||(39631-39866)
scaffold0071 (264-317)||(39461-39514)
[»] chr3 (6 HSPs)
chr3 (6-241)||(15422372-15422607)
chr3 (69-232)||(98687-98850)
chr3 (94-232)||(16087405-16087543)
chr3 (247-310)||(16087667-16087730)
chr3 (118-208)||(15905338-15905428)
chr3 (264-317)||(15422724-15422777)
[»] scaffold0320 (1 HSPs)
scaffold0320 (9-241)||(7881-8112)
[»] scaffold0167 (1 HSPs)
scaffold0167 (9-241)||(8672-8903)
[»] chr4 (2 HSPs)
chr4 (11-241)||(20499217-20499447)
chr4 (253-319)||(20499559-20499625)
[»] chr6 (3 HSPs)
chr6 (1-310)||(11699367-11699676)
chr6 (1-238)||(34334847-34335084)
chr6 (101-310)||(20101854-20102063)
[»] chr8 (4 HSPs)
chr8 (1-241)||(21812165-21812405)
chr8 (1-241)||(21818535-21818775)
chr8 (247-312)||(21812510-21812575)
chr8 (247-312)||(21818880-21818945)
[»] chr2 (2 HSPs)
chr2 (6-241)||(29590653-29590888)
chr2 (247-312)||(29590484-29590549)
[»] scaffold0909 (1 HSPs)
scaffold0909 (102-243)||(1023-1164)
[»] scaffold0074 (2 HSPs)
scaffold0074 (94-239)||(60984-61129)
scaffold0074 (247-310)||(61242-61305)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 23528233 - 23527986
Alignment:
Q  3 ttttattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttgca 102  Q
    |||||||| |||||||||||||| || ||| | |||||||| || ||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  23528233 ttttattgcaagaagatcatatgtcgttttggtctcccaaagcatatagtaacagacaacgggacacagttcgctagttctaaagtcgtaaacttttgca 23528134  T
Q  103 aacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaagaa 202  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||  ||||||| | |||||||||    
T  23528133 aacaattagggattgaaacaaaattcgtttcagtgatccacccccaagctaatgggcaggcagaatcagccaataaagtagtagtcaacgacatcaagaa 23528034  T
Q  203 gaaacttgaggaagctaaaggactatgggcggaacagttgttcgaggt 250  Q
     || |||||||||||||||||||| |||||||||||||| | ||||||    
T  23528033 aaagcttgaggaagctaaaggactttgggcggaacagttatacgaggt 23527986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 12533981 - 12533732
Alignment:
Q  1 agttttattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttg 100  Q
    ||||||| ||||||||||| || ||||| ||| | || |||||| | || || | ||| || || ||||| ||||| |||||||||||| |||| |||||    
T  12533981 agttttactggaagaagattatctgccgttttggtcttccaaaatacattgtgacagataatgggacacaattcgcaagttctaaagtcataaatttttg 12533882  T
Q  101 caaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaag 200  Q
    ||| || || ||||| ||||| ||||| ||||| || || ||||||||||| ||||| ||||||||||| || |||||| ||| ||| || ||||||||     
T  12533881 caagcagctggggatagaaaccaaatttgtttccgtcattcaccctcaagccaatggtcaggcagaatccgctaataaaatgacagttaacggcatcaaa 12533782  T
Q  201 aagaaacttgaggaagctaaaggactatgggcggaacagttgttcgaggt 250  Q
    ||||| || |||||||| |||||||| ||||| ||||| |||| ||||||    
T  12533781 aagaagctggaggaagccaaaggactctgggcagaacaattgtacgaggt 12533732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 15830493 - 15830244
Alignment:
Q  1 agttttattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttg 100  Q
    ||||||| ||||||||||| || ||||| ||  |||| |||||  | || || | ||| ||||| ||||| ||||| |||||||||||| |||| |||||    
T  15830493 agttttactggaagaagattatctgccgtttcggccttccaaagtacattgtgacagataacgggacacaattcgcaagttctaaagtcataaatttttg 15830394  T
Q  101 caaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaag 200  Q
    ||| || || ||||| ||||| ||||| ||||| || || ||||||||||| ||||| || |||||||| || |||||| ||||||| || ||||||||     
T  15830393 caagcagctggggatagaaaccaaatttgtttccgtcattcaccctcaagccaatggtcaagcagaatccgctaataaaatgatagttaacggcatcaaa 15830294  T
Q  201 aagaaacttgaggaagctaaaggactatgggcggaacagttgttcgaggt 250  Q
    ||||| || || ||||| |||||||| ||||| ||||| |||| ||||||    
T  15830293 aagaagctggaagaagcaaaaggactctgggcagaacaattgtacgaggt 15830244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 23527888 - 23527829
Alignment:
Q  253 tatggttataccatacaaccccacattccactactggagagacgccattcactatggtct 312  Q
    |||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  23527888 tatggtcataccatacaaccccacactccactactggagaaacgccattcactatggtct 23527829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 232
Target Start/End: Original strand, 11532026 - 11532189
Alignment:
Q  69 cagttcgccagttctaaagtcgtaaacttttgcaaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaat 168  Q
    ||||| |||||||| | ||||||  | || ||||||||| | || |||||||| || ||||| || || || ||||||||||| ||| |||||||||||     
T  11532026 cagtttgccagttcaagagtcgtcgatttctgcaaacaattgggaattgaaacaaagttcgtatcagtaattcaccctcaagcaaatagacaggcagaag 11532125  T
Q  169 cagccaataaagtgatagtcaatggcatcaagaagaaacttgaggaagctaaaggactatgggc 232  Q
    | ||||| ||||| ||  | ||||| || || ||||| ||||||| ||| |||||||| |||||    
T  11532126 ccgccaacaaagtaattttaaatggtataaaaaagaagcttgaggcagccaaaggactctgggc 11532189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 20516738 - 20516500
Alignment:
Q  3 ttttattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttgca 102  Q
    |||||||||||||||||||||||||| |   | ||||||||||| ||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||    
T  20516738 ttttattggaagaagatcatatgccgttacggtctcccaaaacatatagtaatagacaacgggacacagttcgttagttctaaggtcgtaaacttttgca 20516639  T
Q  103 aacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaagaa 202  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| || ||| |||| | |||||||||    
T  20516638 aacaacttgggattgaaacgaaattcgtttcggtaatccaccctcaagctaatgggcaggcagaatcagctaataaggtaataatcaacgacatcaagaa 20516539  T
Q  203 gaaacttgaggaagctaaaggactatgggcggaacagtt 241  Q
    ||| |||||||||||||||||||| ||||| ||||||||    
T  20516538 gaagcttgaggaagctaaaggactttgggcagaacagtt 20516500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 550923 - 550686
Alignment:
Q  1 agttttattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttg 100  Q
    ||||||| ||||||||||| || ||||  ||| | || |||||| | || || | ||| || || |||||||| || ||||||||||||||||| |||||    
T  550923 agttttactggaagaagattatctgccattttggtcttccaaaatatattgtgacagataatgggacacagtttgcaagttctaaagtcgtaaatttttg 550824  T
Q  101 caaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaag 200  Q
    ||| || || ||||| ||||| ||||| || || || || ||||||||||| ||||| || |||||||| || |||||| ||||||| || | ||||||     
T  550823 caagcagctggggatagaaacaaaatttgtctccgtcattcaccctcaagccaatggtcaagcagaatccgctaataaaatgatagttaacgacatcaaa 550724  T
Q  201 aagaaacttgaggaagctaaaggactatgggcggaaca 238  Q
    ||||| || ||||| |||||||| || ||||| |||||    
T  550723 aagaagctagaggacgctaaaggtctttgggcagaaca 550686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 20516391 - 20516326
Alignment:
Q  247 aggtgttatggttataccatacaaccccacattccactactggagagacgccattcactatggtct 312  Q
    |||| ||||||| ||||||||||||||||||||| || ||||| || ||||| |||||||||||||    
T  20516391 aggtattatggtcataccatacaaccccacattctaccactggggaaacgccgttcactatggtct 20516326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 9467 - 9229
Alignment:
Q  3 ttttattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttgca 102  Q
    ||||||||||||| |||||| ||||| ||| | |||||||| || ||||||| ||||||||| ||||| ||||| |||||||||||||| || |||||||    
T  9467 ttttattggaagaggatcatctgccgttttggtctcccaaagcatatagtaacagacaacgggacacaattcgctagttctaaagtcgtgaatttttgca 9368  T
Q  103 aacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaagaa 202  Q
    |||| |||||||| ||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| |||||||| || || ||||| || |||||||||||    
T  9367 aacagctagggatcgaaacaaaattcgtttcagtgattcacccccaagctaatgggcaggcagagtcagccaacaaggtaatagttaacggcatcaagaa 9268  T
Q  203 gaaacttgaggaagctaaaggactatgggcggaacagtt 241  Q
     ||||||||||| |||||||| || ||||||||||||||    
T  9267 aaaacttgaggaggctaaagggctttgggcggaacagtt 9229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 9126 - 9067
Alignment:
Q  253 tatggttataccatacaaccccacattccactactggagagacgccattcactatggtct 312  Q
    |||||| ||| ||||| ||||| |||||||||||||| || |||||||||||||||||||    
T  9126 tatggtcatatcatacgaccccgcattccactactggggaaacgccattcactatggtct 9067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 39866 - 39631
Alignment:
Q  6 tattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttgcaaac 105  Q
    ||||||||||||||||| ||||| ||| | || |||||||| ||||||| ||||||||| ||||||||||||||||||||||| || || ||||||||||    
T  39866 tattggaagaagatcatctgccgttttggtcttccaaaacatatagtaacagacaacgggacacagttcgccagttctaaagttgtgaatttttgcaaac 39767  T
Q  106 aactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaagaagaa 205  Q
    |  ||||||||||| | ||||||||||| || || ||||| || |||||||||||||| ||||| ||||| ||||| ||||| || |||||||| |||||    
T  39766 agttagggattgaagcaaaattcgtttcagtaattcacccccaggctaatggacaggcggaatctgccaacaaagtaatagtaaacggcatcaaaaagaa 39667  T
Q  206 acttgaggaagctaaaggactatgggcggaacagtt 241  Q
    ||||||||| ||||||||||| |||||||| |||||    
T  39666 acttgaggaggctaaaggactttgggcggagcagtt 39631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 39514 - 39461
Alignment:
Q  264 catacaaccccacattccactactggagagacgccattcactatggtctgtggt 317  Q
    |||||||||||||||||||||||||| ||  |||| ||||||| ||||| ||||    
T  39514 catacaaccccacattccactactggggaagcgccgttcactacggtctatggt 39461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 15422372 - 15422607
Alignment:
Q  6 tattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttgcaaac 105  Q
    ||||||||||||||||| ||||| ||| | || |||||||| ||||||| ||||||||| ||||||||||||||||||||||| || || ||||||||||    
T  15422372 tattggaagaagatcatctgccgttttggtcttccaaaacatatagtaacagacaacgggacacagttcgccagttctaaagttgtgaatttttgcaaac 15422471  T
Q  106 aactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaagaagaa 205  Q
    |  ||||||||||| | ||||||||||| || || ||||| || |||||||||||||| ||||| ||||| ||||| ||||| || |||||||| |||||    
T  15422472 agttagggattgaagcaaaattcgtttcagtaattcacccccaggctaatggacaggcggaatctgccaacaaagtaatagtaaacggcatcaaaaagaa 15422571  T
Q  206 acttgaggaagctaaaggactatgggcggaacagtt 241  Q
    ||||||||| ||||||||||| |||||||| |||||    
T  15422572 acttgaggaggctaaaggactttgggcggagcagtt 15422607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 232
Target Start/End: Complemental strand, 98850 - 98687
Alignment:
Q  69 cagttcgccagttctaaagtcgtaaacttttgcaaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaat 168  Q
    |||||||||||||| | ||||||  |||| ||||||||| | || |||||||| || ||||| || || |  ||||||||||| ||||||||| |||||     
T  98850 cagttcgccagttcaagagtcgtcgacttctgcaaacaattgggaattgaaacaaagttcgtatcagtaactcaccctcaagcaaatggacagccagaag 98751  T
Q  169 cagccaataaagtgatagtcaatggcatcaagaagaaacttgaggaagctaaaggactatgggc 232  Q
    | ||||| ||||| ||  | ||||| || || ||||| ||||||| ||| |||||||| |||||    
T  98750 ccgccaacaaagtaattctgaatggtataaaaaagaagcttgaggcagccaaaggactctgggc 98687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 16087405 - 16087543
Alignment:
Q  94 acttttgcaaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatgg 193  Q
    |||||||||||||| |||| || ||||| |||||||| || || || || |||||||| ||||| || |||||| | ||||| ||||| ||  | |||||    
T  16087405 acttttgcaaacaattaggaatcgaaacaaaattcgtatcagtaattcatcctcaagcaaatgggcaagcagaagccgccaacaaagtaattctgaatgg 16087504  T
Q  194 catcaagaagaaacttgaggaagctaaaggactatgggc 232  Q
     || || ||||| ||||||| ||| |||||||| |||||    
T  16087505 tataaaaaagaagcttgaggcagccaaaggactctgggc 16087543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 16087667 - 16087730
Alignment:
Q  247 aggtgttatggttataccatacaaccccacattccactactggagagacgccattcactatggt 310  Q
    |||| ||||||| |||||| ||||| |||||||| ||||| |||||||| | ||||||||||||    
T  16087667 aggttttatggtcataccacacaacaccacattctactaccggagagacactattcactatggt 16087730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 15905428 - 15905338
Alignment:
Q  118 aaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaagaagaaact 208  Q
    ||||||| ||||| || |||||||||||  ||||||||||||| || || || || || ||||| ||  ||||||| ||||||||||||||    
T  15905428 aaacgaagttcgtctccgtgatccacccataagctaatggacaagccgagtcggctaacaaagtaatcctcaatggaatcaagaagaaact 15905338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 15422724 - 15422777
Alignment:
Q  264 catacaaccccacattccactactggagagacgccattcactatggtctgtggt 317  Q
    |||||||||||||||||||||||||| ||  |||| ||||||| ||||| ||||    
T  15422724 catacaaccccacattccactactggggaagcgccgttcactacggtctatggt 15422777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 7881 - 8112
Alignment:
Q  9 tggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttgcaaacaac 108  Q
    |||||||||||||| ||||| ||| | ||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||| || ||||||||||| |    
T  7881 tggaagaagatcatctgccgttttggtctcccaaaatatatagtaacagacaacgggacacagttcgccagttctaaagtcgtgaatttttgcaaacagc 7980  T
Q  109 tagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaagaagaaact 208  Q
    ||||||||||||| ||||||||||| || || |||||  |||||||||| || |||||||| ||||| || || |||||||| || ||||||||| ||||    
T  7981 tagggattgaaacaaaattcgtttcagtaatgcacccctaagctaatgggcaagcagaatcggccaacaaggtaatagtcaacggtatcaagaag-aact 8079  T
Q  209 tgaggaagctaaaggactatgggcggaacagtt 241  Q
    |||||| ||||||||||| ||||| ||||||||    
T  8080 tgaggaggctaaaggactttgggcagaacagtt 8112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 8903 - 8672
Alignment:
Q  9 tggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttgcaaacaac 108  Q
    |||||||||||||| ||||| ||| | ||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||| || ||||||||||| |    
T  8903 tggaagaagatcatctgccgttttggtctcccaaaatatatagtaacagacaacgggacacagttcgccagttctaaagtcgtgaatttttgcaaacagc 8804  T
Q  109 tagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaagaagaaact 208  Q
    ||||||||||||| ||||||||||| || || |||||  |||||||||| || |||||||| ||||| || || |||||||| || ||||||||| ||||    
T  8803 tagggattgaaacaaaattcgtttcagtaatgcacccctaagctaatgggcaagcagaatcggccaacaaggtaatagtcaacggtatcaagaag-aact 8705  T
Q  209 tgaggaagctaaaggactatgggcggaacagtt 241  Q
    |||||| ||||||||||| ||||| ||||||||    
T  8704 tgaggaggctaaaggactttgggcagaacagtt 8672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 20499217 - 20499447
Alignment:
Q  11 gaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttgcaaacaacta 110  Q
    |||||||||||| ||||| ||| | || || ||||| ||||||| ||||||||  ||||||||||||||||||||||||||  | |||||||||||||||    
T  20499217 gaagaagatcatctgccgttttggtcttccgaaacatatagtaacagacaacgagacacagttcgccagttctaaagtcgtggatttttgcaaacaacta 20499316  T
Q  111 gggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaagaagaaacttg 210  Q
    ||||||||||| || |||||||| || || ||||| ||||||||||| || || ||||| ||||| || || ||||| || |||||||| ||||||||||    
T  20499317 gggattgaaacaaagttcgtttcagtaattcacccccaagctaatgggcaagcggaatctgccaacaaggtaatagtaaacggcatcaaaaagaaacttg 20499416  T
Q  211 aggaagctaaaggactatgggcggaacagtt 241  Q
    |||| ||||||||||| ||||| || |||||    
T  20499417 aggaggctaaaggactttgggcagagcagtt 20499447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 20499559 - 20499625
Alignment:
Q  253 tatggttataccatacaaccccacattccactactggagagacgccattcactatggtctgtggtgc 319  Q
    |||||| |||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||||    
T  20499559 tatggtcataccatacaaccccacattccactactggggaaacgccgttcactatggtctatggtgc 20499625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 11699367 - 11699676
Alignment:
Q  1 agttttattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttg 100  Q
    ||||||| ||||||||||| || ||||| ||| | ||||||||  | || || | ||| ||||| |||||||| || |||||||||||| |||| |||||    
T  11699367 agttttactggaagaagattatctgccgttttggtctcccaaagtatattgtgacagataacgggacacagtttgctagttctaaagtcataaatttttg 11699466  T
Q  101 caaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaag 200  Q
    ||| || || || || ||||||||||| || |  || ||||||||| |||| || || || |||||||| ||||||||| ||||| | || ||| | |||    
T  11699467 caagcagctgggaatagaaacgaaatttgtcttcgtcatccacccttaagccaacggtcaagcagaatccgccaataaaatgataattaacggcgtgaag 11699566  T
Q  201 aagaaacttgaggaagctaaaggactatgggcggaacagttgttcgaggtgttatggttataccatacaaccccacattccactactggagagacgccat 300  Q
    || || || ||||||||||||||||| ||||| ||||| |||  |||||||||||||| ||| ||||| || || |||||||| ||||| || || || |    
T  11699567 aaaaagctggaggaagctaaaggactttgggcagaacaattgcacgaggtgttatggtcatatcatacgactccgcattccaccactggggaaacaccgt 11699666  T
Q  301 tcactatggt 310  Q
    | ||||||||    
T  11699667 ttactatggt 11699676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 34335084 - 34334847
Alignment:
Q  1 agttttattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttg 100  Q
    ||||||| ||||||||||| || ||||| ||| | || |||||| | || || | ||| || || |||||||| || ||||||||||||||||| |||||    
T  34335084 agttttactggaagaagattatctgccgttttggtcttccaaaatatattgtgacagataatgggacacagtttgcaagttctaaagtcgtaaatttttg 34334985  T
Q  101 caaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaag 200  Q
    ||| ||  | ||||| ||||||||||| || || || || ||||||||||| ||||| || |||||||| || |||||| ||||||| || ||||||||     
T  34334984 caagcagttggggatagaaacgaaatttgtctccgtcattcaccctcaagccaatggtcaagcagaatccgctaataaaatgatagttaacggcatcaaa 34334885  T
Q  201 aagaaacttgaggaagctaaaggactatgggcggaaca 238  Q
    ||||| || ||||||||||||||||| ||||| |||||    
T  34334884 aagaagctggaggaagctaaaggactttgggcagaaca 34334847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 310
Target Start/End: Complemental strand, 20102063 - 20101854
Alignment:
Q  101 caaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaag 200  Q
    ||||||| | || ||||| || || ||||| || ||||| |||| |||||| |||||||||||| || | ||||| ||||| ||  | || ||||||||     
T  20102063 caaacaattgggaattgagacaaagttcgtgtcagtgattcaccatcaagcaaatggacaggcaaaagccgccaacaaagtaattctgaacggcatcaaa 20101964  T
Q  201 aagaaacttgaggaagctaaaggactatgggcggaacagttgttcgaggtgttatggttataccatacaaccccacattccactactggagagacgccat 300  Q
    ||||| ||| |||  || |||||||||||||| ||  || |||  |||||  |||||| |||| | || || |||||||| ||||| |||||||| ||||    
T  20101963 aagaagctttaggcggccaaaggactatgggcagagtagctgtatgaggttctatggtcatactacacgacaccacattctactaccggagagacaccat 20101864  T
Q  301 tcactatggt 310  Q
    | ||||||||    
T  20101863 ttactatggt 20101854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 21812165 - 21812405
Alignment:
Q  1 agttttattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttg 100  Q
    |||| |||||||||||||| || ||||| ||| | ||||| ||||| ||  ||| ||| || ||||||||||| || || ||||| ||||| || |||||    
T  21812165 agttctattggaagaagattatctgccgttttggtctcccgaaacatatcataacagataatggaacacagtttgcaagctctaaggtcgtgaatttttg 21812264  T
Q  101 caaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaag 200  Q
    ||| || || ||||| ||||| || ||||| || || || ||||||||||| |||||||| |||||||| ||||| ||| | || || || ||||||||     
T  21812265 caagcagctggggatagaaacaaagttcgtctcagtaattcaccctcaagccaatggacaagcagaatccgccaacaaaataattgttaacggcatcaaa 21812364  T
Q  201 aagaaacttgaggaagctaaaggactatgggcggaacagtt 241  Q
    ||||| |||||||||||||||| ||| ||||| || |||||    
T  21812365 aagaagcttgaggaagctaaagcactttgggcagagcagtt 21812405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 21818535 - 21818775
Alignment:
Q  1 agttttattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttg 100  Q
    |||| |||||||||||||| || ||||| ||| | ||||| ||||| ||  ||| ||| || ||||||||||| || || ||||| ||||| || |||||    
T  21818535 agttctattggaagaagattatctgccgttttggtctcccgaaacatatcataacagataatggaacacagtttgcaagctctaaggtcgtgaatttttg 21818634  T
Q  101 caaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaag 200  Q
    ||| || || ||||| ||||| || ||||| || || || ||||||||||| |||||||| |||||||| ||||| ||| | || || || ||||||||     
T  21818635 caagcagctggggatagaaacaaagttcgtctcagtaattcaccctcaagccaatggacaagcagaatccgccaacaaaataattgttaacggcatcaaa 21818734  T
Q  201 aagaaacttgaggaagctaaaggactatgggcggaacagtt 241  Q
    ||||| |||||||||||||||| ||| ||||| || |||||    
T  21818735 aagaagcttgaggaagctaaagcactttgggcagagcagtt 21818775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 21812510 - 21812575
Alignment:
Q  247 aggtgttatggttataccatacaaccccacattccactactggagagacgccattcactatggtct 312  Q
    |||| ||||||| ||||||||||||||||||||| |||||||| || ||||| |||||||||||||    
T  21812510 aggtattatggtcataccatacaaccccacattctactactggggaaacgccgttcactatggtct 21812575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 21818880 - 21818945
Alignment:
Q  247 aggtgttatggttataccatacaaccccacattccactactggagagacgccattcactatggtct 312  Q
    |||| ||||||| ||||||||||||||||||||| |||||||| || ||||| |||||||||||||    
T  21818880 aggtattatggtcataccatacaaccccacattctactactggggaaacgccgttcactatggtct 21818945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 29590888 - 29590653
Alignment:
Q  6 tattggaagaagatcatatgccgctttagcctcccaaaacagatagtaatagacaacggaacacagttcgccagttctaaagtcgtaaacttttgcaaac 105  Q
    |||||||||||||| || ||||| ||| | ||||||||||| ||  ||| ||| || ||||||||||| || || ||||| ||||||||  ||||||| |    
T  29590888 tattggaagaagattatctgccgttttggtctcccaaaacatattataacagataatggaacacagtttgcaagctctaaggtcgtaaatatttgcaagc 29590789  T
Q  106 aactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaagaagaa 205  Q
    | || ||||| ||||| || ||||| || || || ||||||||||| || ||||| | |||||| ||||| ||| | ||||| || | ||| || |||||    
T  29590788 agctggggatagaaacaaagttcgtctcagtaattcaccctcaagccaacggacaagtagaatccgccaacaaaataatagttaacgacatgaaaaagaa 29590689  T
Q  206 acttgaggaagctaaaggactatgggcggaacagtt 241  Q
     ||||||||||||| |||||| ||||| || |||||    
T  29590688 gcttgaggaagctacaggactttgggcagagcagtt 29590653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 29590549 - 29590484
Alignment:
Q  247 aggtgttatggttataccatacaaccccacattccactactggagagacgccattcactatggtct 312  Q
    |||| ||||||| ||| ||||||||||||||||| || ||||| || ||||| |||||||||||||    
T  29590549 aggtattatggtcatatcatacaaccccacattctaccactggggaaacgccgttcactatggtct 29590484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0909 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0909
Description:

Target: scaffold0909; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 1023 - 1164
Alignment:
Q  102 aaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatggcatcaaga 201  Q
    |||||||| || |||||||| || ||||| || ||||| ||||||||||| ||||| || |||||| | ||||| ||||||||  | ||||||||||| |    
T  1023 aaacaactgggaattgaaacaaagttcgtatcagtgattcaccctcaagcaaatggtcaagcagaagccgccaacaaagtgattctgaatggcatcaaaa 1122  T
Q  202 agaaacttgaggaagctaaaggactatgggcggaacagttgt 243  Q
    |||| |||||||  || |||||||| ||||| || |||||||    
T  1123 agaagcttgaggcggccaaaggactttgggcagagcagttgt 1164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 60984 - 61129
Alignment:
Q  94 acttttgcaaacaactagggattgaaacgaaattcgtttcggtgatccaccctcaagctaatggacaggcagaatcagccaataaagtgatagtcaatgg 193  Q
    |||||||||||||| | || || ||||| ||||| || || || |  ||||||||||| ||||||||||||||| |  |||| || || ||  | |||||    
T  60984 acttttgcaaacaattgggaatcgaaacaaaatttgtatcagtaagtcaccctcaagcaaatggacaggcagaaaccaccaacaaggtaattctgaatgg 61083  T
Q  194 catcaagaagaaacttgaggaagctaaaggactatgggcggaacag 239  Q
     || || ||||| ||||||| ||| |||||||| ||||||||||||    
T  61084 tataaaaaagaagcttgaggcagccaaaggactctgggcggaacag 61129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 61242 - 61305
Alignment:
Q  247 aggtgttatggttataccatacaaccccacattccactactggagagacgccattcactatggt 310  Q
    |||| ||||||| |||||| ||||| |||||||| ||||  |||||||| ||||||||||||||    
T  61242 aggttttatggtcataccacacaacaccacattctactaacggagagacaccattcactatggt 61305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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