View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4068_low_2 (Length: 271)
Name: NF4068_low_2
Description: NF4068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4068_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 90 - 255
Target Start/End: Original strand, 32093540 - 32093701
Alignment:
| Q |
90 |
catggttttttaatcaatatgaccatgctttttctttaatcaggtaactatgacctaagaataaaaaagggagtccaaatttaaaaccttgatccaaaat |
189 |
Q |
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| T |
32093540 |
catggttttttaatcaatatgaccatgatttttctttaatcaggtaactatgacctaagaataaaaaagggagtccaaatttaagaccttgatccaaaat |
32093639 |
T |
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| Q |
190 |
gcttatttttgttcttgaagagttccaaagagagtctgaggcatcaagttgtaacttctgaccttt |
255 |
Q |
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| T |
32093640 |
gctta-ttttgttcttgaagagtcc---acagagtctgaggcagcaagttgtaacttctgaccttt |
32093701 |
T |
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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 32093425 - 32093477
Alignment:
| Q |
36 |
gataaactaaatcttataaaattaaggacacaatttataaaattccaataaaa |
88 |
Q |
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| T |
32093425 |
gataaactaaatcttataaaattgaggacacaatttataaaattccaataaaa |
32093477 |
T |
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