View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4069_low_1 (Length: 639)

Name: NF4069_low_1
Description: NF4069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4069_low_1
NF4069_low_1
[»] chr4 (3 HSPs)
chr4 (236-620)||(5230312-5230691)
chr4 (5-158)||(5230687-5230842)
chr4 (36-74)||(43061682-43061720)
[»] chr7 (3 HSPs)
chr7 (262-464)||(25338224-25338426)
chr7 (156-223)||(6936318-6936385)
chr7 (157-223)||(35574989-35575055)
[»] chr8 (4 HSPs)
chr8 (156-223)||(8056859-8056926)
chr8 (156-223)||(17137272-17137339)
chr8 (172-223)||(443678-443729)
chr8 (6-72)||(11556955-11557021)
[»] chr1 (2 HSPs)
chr1 (156-223)||(11562462-11562529)
chr1 (157-223)||(15103544-15103610)
[»] chr5 (3 HSPs)
chr5 (157-223)||(18626225-18626291)
chr5 (22-74)||(18542220-18542272)
chr5 (22-74)||(26208015-26208067)
[»] chr3 (3 HSPs)
chr3 (173-223)||(16310987-16311037)
chr3 (173-223)||(18487771-18487821)
chr3 (173-223)||(18491981-18492031)
[»] chr2 (2 HSPs)
chr2 (186-223)||(23059252-23059289)
chr2 (171-223)||(44176721-44176773)


Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 236 - 620
Target Start/End: Complemental strand, 5230691 - 5230312
Alignment:
Q  236 gagttagagtgtgtgaaaacttgctgtggcaaggtacaatcttctggctgccactcccaatgaagataatcagaatcattccttccattcttgacacaag 335  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5230691 gagttagagtgtgtgaaaacttactgtggcaaggtacaatcttctggctgccactcccaatgaagataatcagaatcattccttccattcttgacacaag 5230592  T
Q  336 aaaattgtttatctatgtatggacagcttttatctgagtataaaggctttattgaactgttaaatatccattttccattagcaacattgcattcttctgg 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5230591 aaaattgtttatctatgtatggacagcttttatctgagtataaaggctttattgaactgttaaatatccattttccattagcaacattgcattcttctgg 5230492  T
Q  436 atcaaaatcaaacctatcatcaatccatgaggcatttaaaacaacatcctcaatttttctgtcatctgttgaaaaattacattatcaagagtcaaattgg 535  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5230491 atcaaaatcaaacctatcatcaatccatgaggcatttaaaaccacatcctcaatttttctgtcatctgttgaaaaattacattatcaagagtcaaattgg 5230392  T
Q  536 taaagcnnnnnnnnnnnnnnnnnnnggaaagtagaatgagaatatgatgagatagttttggtgcatttgcgaagctaattacgca 620  Q
    ||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5230391 taaagc-----aaaaagaaaaaaaaggaaagtagaatgagaatatgatgagatagttttggtgcatttgcgaagctaattacgca 5230312  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 5230842 - 5230687
Alignment:
Q  5 gacacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgttacatgtcggatacaagatgcacctttggt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  5230842 gacacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgttacgtgtcagatacaagatacacctttggt 5230743  T
Q  105 ccgaactccaaagtattggtgcggc--atagaagatgaataaaatgaacatgagtt 158  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||||||||||    
T  5230742 ccgaactccaaagtattggtgcgacatatagaagatgaataaaatgaacatgagtt 5230687  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 43061720 - 43061682
Alignment:
Q  36 aatttgagaaaatataactaattgaatgtaaccacatgt 74  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  43061720 aatttgagaaaatataaataattgaatgtaacaacatgt 43061682  T

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Target: chr7 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 262 - 464
Target Start/End: Complemental strand, 25338426 - 25338224
Alignment:
Q  262 tggcaaggtacaatcttctggctgccactcccaatgaagataatcagaatcattccttccattcttgacacaagaaaattgtttatctatgtatggacag 361  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||||  | || ||||| || | ||||||||||||| | ||||| ||||||||     
T  25338426 tggcaaggtgcaatcttctggctgccactcccaatgttgataatcagaatctgttctaccattttttatacaagaaaattgtctttctatatatggacaa 25338327  T
Q  362 cttttatctgagtataaaggctttattgaactgttaaatatccattttccattagcaacattgcattcttctggatcaaaatcaaacctatcatcaatcc 461  Q
     || | || | ||| |  |||||||||||   |||||| | |||||||||||| ||||  |||||||||||||  |||||||||||||| ||||||||||    
T  25338326 gttatgtcagtgtagattggctttattgattggttaaaaacccattttccattggcaatgttgcattcttctgagtcaaaatcaaacctgtcatcaatcc 25338227  T
Q  462 atg 464  Q
    |||    
T  25338226 atg 25338224  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 6936385 - 6936318
Alignment:
Q  156 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  6936385 gttttgtttgaattggtttgtatgcggttcaggcttctcctgacttttatttgattttctagctttat 6936318  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 35575055 - 35574989
Alignment:
Q  157 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    ||||| ||||| || ||||||||  |||| ||| ||||||| ||||||||| |||||||||||||||    
T  35575055 ttttgcttgaactgttttgtatgcagttcgggcctctcctgacttttatttaaatttctagctttat 35574989  T

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Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 8056859 - 8056926
Alignment:
Q  156 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  8056859 gttttgtttgaattggtttgtatgcggttcaggcttctcctggcttttatttgattttctagctttat 8056926  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 17137272 - 17137339
Alignment:
Q  156 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  17137272 gttttgtttgaattggtttgtatgcggttcaggcttctcctggcttttatttgattttctagctttat 17137339  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 443678 - 443729
Alignment:
Q  172 tttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    |||| ||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  443678 tttgcatgcggttcaggcttctcctgtcttttatttgaatttatagctttat 443729  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 11557021 - 11556955
Alignment:
Q  6 acacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacat 72  Q
    |||||||||| |||||| || |||  ||| ||||||||||||| ||| | |||||||||||||||||    
T  11557021 acacaacactaacatgtagacacctgtaataatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

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Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 11562529 - 11562462
Alignment:
Q  156 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  11562529 gttttgtttgaattggtttgtatgcggttcaggcttctcctgacttttatttgaatttctagcgttat 11562462  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 15103544 - 15103610
Alignment:
Q  157 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    ||||| |||||||| ||| |||| |||||||||||||| || ||||||| |||| ||||||||||||    
T  15103544 ttttgcttgaattgttttatatgcggttcaggcttctcatgacttttatgtgaacttctagctttat 15103610  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 18626291 - 18626225
Alignment:
Q  157 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    ||||| |||||||| |||||||| ||||||||||||||| | ||||||||| |||||||||||||||    
T  18626291 ttttgcttgaattgttttgtatgcggttcaggcttctccggacttttatttaaatttctagctttat 18626225  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 18542272 - 18542220
Alignment:
Q  22 tcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgt 74  Q
    |||| |||| ||| |||||||||||||| || ||||||||||||| |||||||    
T  18542272 tcgacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatgt 18542220  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 26208067 - 26208015
Alignment:
Q  22 tcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgt 74  Q
    ||||||| ||||| |||||||||||||| || |  ||||||||||||||||||    
T  26208067 tcgatactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgt 26208015  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 16310987 - 16311037
Alignment:
Q  173 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  16310987 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 16311037  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 18487771 - 18487821
Alignment:
Q  173 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  18487771 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 18487821  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 18491981 - 18492031
Alignment:
Q  173 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  18491981 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 18492031  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 23059252 - 23059289
Alignment:
Q  186 aggcttctcctggcttttatttgaatttctagctttat 223  Q
    |||||||||||| |||||||||||||||||||||||||    
T  23059252 aggcttctcctgacttttatttgaatttctagctttat 23059289  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 44176721 - 44176773
Alignment:
Q  171 gtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 223  Q
    ||||||||| ||||||||| || ||||||||||  ||||||||||||||||||    
T  44176721 gtttgtatgaggttcaggcatcacctggctttttattgaatttctagctttat 44176773  T

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