View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4069_low_2 (Length: 350)
Name: NF4069_low_2
Description: NF4069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4069_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 213 - 337
Target Start/End: Complemental strand, 37554371 - 37554247
Alignment:
| Q |
213 |
aaagggacatgaattcaaatttaatcctcctctgtgtggtgttcccatattatttatcaacttcaacaataaaaataattgttggggccaactttgtcgc |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37554371 |
aaagggacatgaattaaaatttaatcctcctctgtgtggtgttcgtatattatttatcaacttcaacaataaaaataattgttggggccaactttgtcgc |
37554272 |
T |
|
| Q |
313 |
taataaaaatagagctcgaacgttc |
337 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
37554271 |
taataaaaacagagctcgaacgttc |
37554247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 37554570 - 37554481
Alignment:
| Q |
20 |
agggaaacatttatattaatttgtagaattgcgcgcacacatgcacacaaatatatgtgtgtaagtt-gcactcacgagcgcgtaagggagg |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| || ||| ||||||||||||||||| |
|
|
| T |
37554570 |
agggaaacatttatattaatttgttgaattgcgcgcacacatgcatacaaatatatgtgt--aagtgcgcgctcgcgagcgcgtaagggagg |
37554481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 37556380 - 37556444
Alignment:
| Q |
20 |
agggaaacatttatattaatttgtagaattgcgcgcacacatgcacacaaatatatgtgtgtaagt |
85 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
37556380 |
agggaaacatttatattaatttgtagcattgcgcgcacacatacatacaaa-atatgcgtgtaagt |
37556444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University