View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4069_low_3 (Length: 266)
Name: NF4069_low_3
Description: NF4069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4069_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 11164482 - 11164718
Alignment:
| Q |
11 |
agcaaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgcagtagaggccgaccgaagaagtctctggtgggttcagcttcgg |
110 |
Q |
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| T |
11164482 |
agcaaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgctgtagaggccgaccgaagaagtcgctggtgggttcagcttcgg |
11164581 |
T |
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| Q |
111 |
gttcgaatagtaatgaattctattattattctgggtttggtccatcacggaggaaacaacgaaagggtgattgtaaaagtgaaggtgaagataacaagag |
210 |
Q |
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| T |
11164582 |
gttcgaatagtaatgaattctattattattctgggtttggtccatcgcggaggaaacaacgaaagggtgattgtaaaagtgaaggtgaagataacaagag |
11164681 |
T |
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| Q |
211 |
tgttgtggaattaggttctactagtagtgataatgtt |
247 |
Q |
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| T |
11164682 |
tgttgtggaattaggttctactagtagtgataatgtt |
11164718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 11157545 - 11157654
Alignment:
| Q |
13 |
caaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgcagtagaggccgaccgaagaagtctctggtgggttcagcttcgggt |
112 |
Q |
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| T |
11157545 |
caaaggtttgaagagaaactggaatgggggcggcggcattgaggctccgcggcgtggtagaggccgaccgaagaagtc---ggtgggttcggcttcgggt |
11157641 |
T |
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| Q |
113 |
tcgaatagtaatg |
125 |
Q |
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| T |
11157642 |
tcaaataataatg |
11157654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 4703693 - 4703486
Alignment:
| Q |
13 |
caaaggtttgaagagaaactcgaatgggggcgggagcattgaggcgccacgacgcagtagaggccgaccgaagaagtctctggtgggttcagcttcgggt |
112 |
Q |
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||||||||||||||||||||| |||||||| || |||||||||||| || || |||||||| ||||||||||| | || ||||||||| ||| |
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| T |
4703693 |
caaaggtttgaagagaaactcaaatgggggaggagacattgaggcgccgcggcgtggtagaggcagaccgaagaaggtgaaagcggattcagcttcaggt |
4703594 |
T |
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| Q |
113 |
tcgaatagtaatgaattctattattattctgggtttggtccatcacggaggaaacaacgaaagggtgattgtaaaagtgaaggtgaagataacaagagtg |
212 |
Q |
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| T |
4703593 |
tcgaataataatgaattctatttttattctgggtttggtccaccacgaggga---aacgaagaggtga---taaaaatgatggtgaagataacaagagtg |
4703500 |
T |
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| Q |
213 |
ttgtggaattaggt |
226 |
Q |
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|||| | ||||||| |
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| T |
4703499 |
ttgtagcattaggt |
4703486 |
T |
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