View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4069_low_7 (Length: 231)
Name: NF4069_low_7
Description: NF4069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4069_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 12731235 - 12731424
Alignment:
| Q |
23 |
gcgaaaccgaaaccgcatctaatcttcgcatacggaacattgaaacaaggattccccaaccacggtttaatggaagatcttaaaaccaaagacgacgccg |
122 |
Q |
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| T |
12731235 |
gcgaaagcgaaaccgcatctaatcttcgcatacggaacattgaaacaaggattccccaaccacggtttaatggaagatcttaaaaccaaagacgacgccg |
12731334 |
T |
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| Q |
123 |
ttttcatgaatacatactccacacagaaaccgtatccactggtgattggaccccacggaataccgtacctgatcaacctacccgggtcgg |
212 |
Q |
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| T |
12731335 |
ttttcatgaatacatactccacacagaaaccgtatccactggtgattggaccccacggaataccgtacctgatcaacctacccgggtcgg |
12731424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 12794025 - 12794214
Alignment:
| Q |
23 |
gcgaaaccgaaaccgcatctaatcttcgcatacggaacattgaaacaaggattccccaaccacggtttaatggaagatcttaaaaccaaagacgacgccg |
122 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794025 |
gcgaaagcgaaaccgcatctaatcttcgcatacggaacattgaaacaaggattccccaaccacggtttaatggaagatcttaaaaccaaagacgacgccg |
12794124 |
T |
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| Q |
123 |
ttttcatgaatacatactccacacagaaaccgtatccactggtgattggaccccacggaataccgtacctgatcaacctacccgggtcgg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794125 |
ttttcatgaatacatactccacacagaaaccgtatccactggtgattggaccccacggaataccgtacctgatcaacctacccgggtcgg |
12794214 |
T |
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