View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4069_low_8 (Length: 222)
Name: NF4069_low_8
Description: NF4069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4069_low_8 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13051479 - 13051259
Alignment:
| Q |
1 |
cgctataggaatattattgttaattgtgtaattaatccttacttagcatgtaacttgtaatgcgagtaaggacataaactatcacccccatgtgtagttg |
100 |
Q |
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| T |
13051479 |
cgctataggaatattattgttaattgtgtaattaatccttacttagcatgttacttgtaatgcaagtaaggacataaactatcactcccttgtgtagttg |
13051380 |
T |
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| Q |
101 |
tatgtgtgtgcacgtgcgcgcgcgccattaaagtatttaccaaaggaggactgaaaaacaaaggaccagcaatttgagcaggccaatgaccatcactggt |
200 |
Q |
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| T |
13051379 |
tatgtgtgtgcatgtgcgcgcgcgccattaaagtatttaccaaaggaggaatgaaaaacaaaggaccagcaatttgagcaggccaatgaccatcactggt |
13051280 |
T |
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| Q |
201 |
ttgcaatgctgctaggtgatg |
221 |
Q |
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| T |
13051279 |
ttgcaatgctgctaggtgatg |
13051259 |
T |
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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 101983 - 101907
Alignment:
| Q |
139 |
accaaaggaggactgaaaaacaaaggaccagcaatttgagcaggccaatgaccatcactggtttgcaatgctgctag |
215 |
Q |
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| T |
101983 |
accaagggaggcatgaaaaatagaggacctgcaatttgagcaggccaatggccatcactggtttgcaatgctgctag |
101907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 161333 - 161269
Alignment:
| Q |
155 |
aaaacaaaggaccagcaatttgagcaggccaatgaccatcactggtttgcaatgctgctaggtga |
219 |
Q |
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| T |
161333 |
aaaacagaggacctgcaatttgagcaggccaatggccatcttgagtttgcaatgctactaggtga |
161269 |
T |
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Target: scaffold0013 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 93941 - 94023
Alignment:
| Q |
139 |
accaaaggaggactgaaaaacaaaggaccagcaatttgagcaggccaatgaccatcactggtttgcaatgctgctaggtgatg |
221 |
Q |
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| T |
93941 |
accaaaggaggaacgtaaaatagaggccctgcaatttgagcaggccaatggccatcactggtttgcaatgcagctaggtgatg |
94023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 43402326 - 43402288
Alignment:
| Q |
6 |
taggaatattattgttaattgtgtaattaatccttactt |
44 |
Q |
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| T |
43402326 |
taggaatattattgttaattgtgtaattagtccttactt |
43402288 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 12138603 - 12138685
Alignment:
| Q |
139 |
accaaaggaggactgaaaaacaaaggaccagcaatttgagcaggccaatgaccatcactggtttgcaatgctgctaggtgatg |
221 |
Q |
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| T |
12138603 |
accaagggaggaaggaaaaacattggacctgcattttgagcaggccaatggccatcgctagtctgcaatgccgctaggtgatg |
12138685 |
T |
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