View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_high_1 (Length: 482)
Name: NF4070_high_1
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 236 - 472
Target Start/End: Original strand, 27217672 - 27217908
Alignment:
| Q |
236 |
ccttagattgttcgatgagtttgtctttttcctttagttttttgaggagtgaagtgttctgatcgtggagattctgttcggattctttagaggtggacca |
335 |
Q |
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| T |
27217672 |
ccttagattgttcgatgagtttgtctttttcctttagttttttgaggagtgaagtgttctgatcgcggagattctgttcggattctttagaggtggacca |
27217771 |
T |
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| Q |
336 |
aataatgagctgcaccagtcaagatgatggcatgattttcgagttgatatcaaaagatattccattttgttgaagtctttgttgcagaacagttgggcta |
435 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27217772 |
aataatgagctgcaccagtcaagatgatagcatgattttcgagttgatatctaaagatattccattttgttgaagtctttgttgcagaacagttgggcta |
27217871 |
T |
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| Q |
436 |
aatacaatacattgagtacaagatactcccccctttg |
472 |
Q |
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| T |
27217872 |
aatacaatacattgagtacaagatactcccccctttg |
27217908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 27217453 - 27217608
Alignment:
| Q |
17 |
aaatcaatcaacacatccttatcattatcctaaagcgcacattccttttccaaattcgataatgtcccaatagattctcagactctgccgccaatttcag |
116 |
Q |
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| T |
27217453 |
aaatcaatcaacacatccttatcattatcataaagcgcacattccttttccaaattcgataatgtcccaatagattctcagactctgccgccaatttcag |
27217552 |
T |
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| Q |
117 |
attctcttctacgaacttcattatctctaatgcactcacacacttttcatactatt |
172 |
Q |
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| T |
27217553 |
attctcttcaacgaactttattatctctaatgcactcacacacttatcatactatt |
27217608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 236 - 445
Target Start/End: Original strand, 27201886 - 27202094
Alignment:
| Q |
236 |
ccttagattgttcgatgagtttgtctttttcctttagttttttgaggagtgaagtgttctgatcgtggagattctgttcggattctttagaggtggacca |
335 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| | | ||| |
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| T |
27201886 |
ccttagattgttcgatgagttcgtctttttcctttagatttttgaggagtgaagtgttctgatcgcagagattct-ttcggattcttttatagcgcaccg |
27201984 |
T |
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| Q |
336 |
aataatgagctgcaccagtcaagatgatggcatgattttcgagttgatatcaaaagatattccattttgttgaagtctttgttgcagaacagttgggcta |
435 |
Q |
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| T |
27201985 |
aataatgagctgtagcagtcaagaagaaagcttgctttttgagatgacatcaaaagatattctatattgttgaagtctttattgcagattagttggacca |
27202084 |
T |
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| Q |
436 |
aatacaatac |
445 |
Q |
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|||||||||| |
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| T |
27202085 |
aatacaatac |
27202094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 328
Target Start/End: Original strand, 27240239 - 27240331
Alignment:
| Q |
236 |
ccttagattgttcgatgagtttgtctttttcctttagttttttgaggagtgaagtgttctgatcgtggagattctgttcggattctttagagg |
328 |
Q |
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|||| |||||||| ||||||| |||| |||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
27240239 |
ccttggattgttcaatgagttcgtctctttcttttagtttttgaaggagtgaagtgttctgatcgcggagattttgttcggattctttggagg |
27240331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 27239997 - 27240152
Alignment:
| Q |
17 |
aaatcaatcaacacatccttatcattatcctaaagcgcacattccttttccaaatt-cgataatgtcccaatagattctcagactctgccgccaatttca |
115 |
Q |
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|||||||||||| | || |||||||||| || | |||||||||||| |||| || | | |||| ||||| ||||||||| |||| |||||||||||| |
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| T |
27239997 |
aaatcaatcaacgcttctctatcattatcatacaacgcacattccttctccagttttctacaatgccccaacagattctcacactccgccgccaatttct |
27240096 |
T |
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| Q |
116 |
gattctcttctacgaacttcattatctctaatgcactcacacacttttcatactat |
171 |
Q |
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||||||| || || |||||| ||||| | || ||| |||||||| |||||||||| |
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| T |
27240097 |
gattctcctcaacaaacttctttatcgccaacgcattcacacacgcttcatactat |
27240152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 37578694 - 37578771
Alignment:
| Q |
338 |
taatgagctgcaccagtcaagatgatggcatgattttcgagttgatatcaaaagatattccattttgttgaagtcttt |
415 |
Q |
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||||||||||||| |||||||| ||| || || |||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
37578694 |
taatgagctgcacaagtcaagaagatagcttgcttttcgagatgacatcaaaagatattccattttgttgaagtcttt |
37578771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 4276462 - 4276403
Alignment:
| Q |
384 |
atcaaaagatattccattttgttgaagtctttgttgcagaacagttgggctaaatacaat |
443 |
Q |
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| T |
4276462 |
atcaaaagatatgccattttgttgaagtctttcttgaagatcagtcggaccaaatacaat |
4276403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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