View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_high_12 (Length: 308)
Name: NF4070_high_12
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 4680509 - 4680799
Alignment:
| Q |
1 |
tcatcatccaagctgtttacaaagtgttttccaatctcaaatctccccaaagcactcatcttttaactaaaagttctctattttagtctcccgagcctta |
100 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4680509 |
tcattatccaaagtgtttacaaagtgttttccaatctcaaatctccccaaagcactcatcttttaactaaaagttctctattttagtctcccaagcctta |
4680608 |
T |
|
| Q |
101 |
aaaagcagcattgagtttataaagaatttgtgtcatccgccttgtgcatgggagataactcagccgcctcgcggatgggagataacttaatcaatttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4680609 |
aaaagcagcattgagtttataaagaatttgtgtcatccgccttgtgcatgggagataactcagccgcctcgcggatgggagataacttaatcaatttttt |
4680708 |
T |
|
| Q |
201 |
aaacttttgtaaacgatgagatttcaaggtatatacaacaattatgtacctttaaatcgatgatattgtcaatttaaccgacccccttgtt |
291 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4680709 |
aaacttttgtaaacgatgagatttcaaggcatatacaacaattatgtacctttaaatcgatgatgttgtcaatttaaccgacccccttgtt |
4680799 |
T |
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