View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_high_19 (Length: 231)
Name: NF4070_high_19
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_high_19 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 51455841 - 51455644
Alignment:
| Q |
15 |
acagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51455841 |
acagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttgtcactacaaaaagtgtgaagtcaacaa |
51455742 |
T |
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| Q |
115 |
ctatatagcattagaataagtnnnnnnnngcattgattaatataccaaatcagtccttaccagaacacacgctcatctttagaataatccgccggtttt |
213 |
Q |
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| T |
51455741 |
ctatatagcattagaataagt-aaaaaaagcattgattaatataccaaatcagtctttaccagaacacacgctcatctttagaataatccgccggtttt |
51455644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 30206808 - 30206922
Alignment:
| Q |
19 |
aggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacagctat |
118 |
Q |
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| T |
30206808 |
aggagacaaatgtcaaaagagcattttgtacagcttctgtggtagtcaaatattgacgttttgcagttgtcactacaaaaagtgttaagtcattaactat |
30206907 |
T |
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| Q |
119 |
atagcattagaataa |
133 |
Q |
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|||| ||||| |||| |
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| T |
30206908 |
atagaattagtataa |
30206922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 51480535 - 51480424
Alignment:
| Q |
22 |
agacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaacagctatata |
121 |
Q |
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| T |
51480535 |
agacaaatgttaaaagagcattctgtacagcttctgtggtagtcaaatattgatgttttgcagttgtcactacaaaaagtgttaaatcattagcaatata |
51480436 |
T |
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| Q |
122 |
gcattagaataa |
133 |
Q |
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| T |
51480435 |
gaatcagaataa |
51480424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 51497394 - 51497310
Alignment:
| Q |
19 |
aggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgt |
103 |
Q |
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| T |
51497394 |
aggagacaaatgtcaaaagaacattttgtacagcttctgtggtagtcgaatattgaggttttgcagatgtcactacagaaagtgt |
51497310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 43160774 - 43160573
Alignment:
| Q |
15 |
acagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgtgaagtcaaca- |
113 |
Q |
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||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |
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| T |
43160774 |
acagaggagacaaaggttaaaagggcattttgtgcagcttctgcggtagtcaaatattgatgttttgcagttgtcactataaaaagtgtgaagccaacat |
43160675 |
T |
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| Q |
114 |
----gctatatagcattagaataagtnnnnnnnngcattgattaatataccaaatcagtccttaccagaacacacgctcatctttagaataatccgccgg |
209 |
Q |
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| T |
43160674 |
tgtcactataaagcattag-ataagtaaagaaaa-cattgattaatataccaaatcagtccttaccagaacacacgcgcatctttagaataatccgccgg |
43160577 |
T |
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| Q |
210 |
tttt |
213 |
Q |
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|||| |
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| T |
43160576 |
tttt |
43160573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 27396548 - 27396465
Alignment:
| Q |
15 |
acagaggagacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaa |
98 |
Q |
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| T |
27396548 |
acagaggagacaaaggtcaaaggaacattctgtgcagcttctgtggtaatcaaatattgatgttttgcagttgtcgctacaaaa |
27396465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 20868672 - 20868751
Alignment:
| Q |
22 |
agacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagt |
101 |
Q |
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| T |
20868672 |
agacaaaggtcaaaagagcattttgcacaacttcggtggtagtcaaatatcgagctctggcagttgtcactacaaaaagt |
20868751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 137353 - 137431
Alignment:
| Q |
22 |
agacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaag |
100 |
Q |
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| T |
137353 |
agacaaaggtcaaaagagcattttgtacagcttctgtggtagtcaaatattaagctttggcagttgtcactacaaaaag |
137431 |
T |
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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 18085634 - 18085553
Alignment:
| Q |
22 |
agacaaaggtcaaaagagcattttgaacagcttctgtggtagtcaaatattgatgttttgcagttatcactacaaaaagtgt |
103 |
Q |
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| T |
18085634 |
agacaaatgttaaaagagcattctttacagctcctgtggtagtcgaatattgatgttttgcagttgtcactacaaaaagtgt |
18085553 |
T |
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