View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_high_4 (Length: 446)
Name: NF4070_high_4
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 10 - 441
Target Start/End: Complemental strand, 4676933 - 4676502
Alignment:
| Q |
10 |
aatcattggataggtctattagaccctcttgacattgatctacgacgttacataatccactatggtgaaatggcacaagcaacatacgatgctttcaaca |
109 |
Q |
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| T |
4676933 |
aatcattggataggtctattagaccctcttgacattgatctacgacgttacataatccactatggtgaaatggcacaagcaacatacgatgctttcaaca |
4676834 |
T |
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| Q |
110 |
cagagaaagcatcaaagtttgcaggtagttgtaggtatgcaaagaatgatttcttttctaaagnnnnnnnagaaaatggaaatccttttaaatattctgt |
209 |
Q |
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| T |
4676833 |
cagagaaagcatcaaagtttgcaggtagttgtaggtatgcaaagaatgatttcttttctaaagtttttttagaaaatggaaatccttttaaatattctgt |
4676734 |
T |
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| Q |
210 |
gacaaaatttatttatgcgacttccgaaatcaatgttccggaagcgtttattataaagtctttatctagagaagcttggagtaaggaatcaaattggatt |
309 |
Q |
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| T |
4676733 |
gacaaaatttatttatgcgacttccgaaatcaatgttccggaagcgtttattataaagtctttatctagagaagcttggagtaaggaatcaaattggatt |
4676634 |
T |
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| Q |
310 |
ggatttgttgctgtggctaatgatgaagggaaagatgtgttggggagaagggatattgtgattgcttggagaggaacgattcaaacattggaatgggtta |
409 |
Q |
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| T |
4676633 |
ggatttgttgctgtggctaatgatgaagggaaagatgtgttggggagaagggatattgtgattgcttggagaggaacgattcaaacattggaatgggtta |
4676534 |
T |
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| Q |
410 |
atgatcttcagtttcttttggtctctgctcct |
441 |
Q |
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| T |
4676533 |
atgatcttcagtttcttttggtttctgctcct |
4676502 |
T |
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