View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_high_6 (Length: 342)
Name: NF4070_high_6
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 76 - 318
Target Start/End: Complemental strand, 18291879 - 18291640
Alignment:
| Q |
76 |
acattatatctatcataagctaactgcacagtaacactatctactctaactgtcacaacagaattacagctggcatagtaaagtttgttagggtttgctc |
175 |
Q |
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| T |
18291879 |
acattatatctatcataagctaactacacagtaacactatctactctaactgtcacaacagaaatacagctggcctagtacagtttgttagggtttgctc |
18291780 |
T |
|
| Q |
176 |
aagttacttgcatcgcaagtaacttcttcttcttctttattttgtaacatacatcaataggaaggctacatgctaacattacaaaaaattgacatttaaa |
275 |
Q |
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|||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18291779 |
aagttacttgcatcacaagtaacttcatcttctt---tattttgtaacatacatcaataggaaggctacatgctaacattacaaaaaattgacatttaaa |
18291683 |
T |
|
| Q |
276 |
agtcatgtctctattaaggtatgtagtgttagaacaatgtatc |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18291682 |
agtcatgtctctattaaggtatgtagtgttagaacaatgtatc |
18291640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 18293872 - 18293805
Alignment:
| Q |
15 |
attattgaattgagtgaatgggttacaatgtgtaagcacttatttataagctaatgaaggtacattat |
82 |
Q |
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| T |
18293872 |
attattgaattgtatgaatgagttacaatgtgtaagcacttatttataagctaatgaaggtacattat |
18293805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 18294004 - 18293967
Alignment:
| Q |
225 |
tacatcaataggaaggctacatgctaacattacaaaaa |
262 |
Q |
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| T |
18294004 |
tacatcaataggaaggctacattctaacattacaaaaa |
18293967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 15094890 - 15094697
Alignment:
| Q |
29 |
tgaatgggttacaatgtgtaagcacttatttataagctaatgaaggtacattatatctatcataagctaactgcacagtaacactatctactctaactgt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| |
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| T |
15094890 |
tgaatgggttacaatgtgtaagcacttatttataagctaatgaaggtacattatatctatcataagctaactacacagtagcactat-tactctaactgt |
15094792 |
T |
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| Q |
129 |
cacaacagaattacagctggcatagtaaagtttgttagggtttgctcaagttacttgcatcgcaagtaacttcttcttcttctttattttgtaaca |
224 |
Q |
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| T |
15094791 |
ca-aacagaattacagttggcatagtaaagtttgttagggtttgctcaagttacttgcatcgcaagtaacttcttcttcctctttattttgtaaca |
15094697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 15094953 - 15094894
Alignment:
| Q |
15 |
attattgaattgagtgaatgggttacaatgtgtaagcacttatttataagctaatgaagg |
74 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15094953 |
attattgaatggaatgaatgggttacaatgtgtaagcacttatttataagctaatgaagg |
15094894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 13892566 - 13892359
Alignment:
| Q |
15 |
attattgaattgagtgaatgggttacaatgtgtaagcacttatttataagctaatgaaggtacattatatctatcataagctaactgcacagtaacacta |
114 |
Q |
| |
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|||||||||| || ||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| |||||| || |||||||| | |
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| T |
13892566 |
attattgaat-gaatgaatctgttacaatgtgcaagcacctatttataagctaatgagagtacattatatctatcatacactaactacatagtaacacaa |
13892468 |
T |
|
| Q |
115 |
tctactctaactgtcacaacagaattacagctggcatagtaaagtttgttagggtttgctcaagttacttgcatcgcaagtaacttcttcttcttcttta |
214 |
Q |
| |
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|| ||||||||||| ||||||| ||||| ||||||| | |||||||||||||||||||||||||||||| ||| ||||||| ||||||||| |||||| |
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| T |
13892467 |
-ctcatctaactgtcataacagaaatacagttggcatattgaagtttgttagggtttgctcaagttacttgtatcacaagtaagttcttcttcctcttta |
13892369 |
T |
|
| Q |
215 |
ttttgtaaca |
224 |
Q |
| |
|
|||||||||| |
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|
| T |
13892368 |
ttttgtaaca |
13892359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 36 - 224
Target Start/End: Complemental strand, 13887890 - 13887702
Alignment:
| Q |
36 |
gttacaatgtgtaagcacttatttataagctaatgaaggtacattatatctatcataagctaactgcacagtaacactatctactctaactg-tcacaac |
134 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||| |||||||||||| |||||| |||||| | |||||||| | || ||||||||| ||| ||| |
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| T |
13887890 |
gttacaatgtacaagcacctatttataagctaatgagagtacattatatccatcatacactaactaaatagtaacacaa-ctcctctaactggtcataac |
13887792 |
T |
|
| Q |
135 |
agaattacagctggcatagtaaagtttgttagggtttgctcaagttacttgcatcgcaagtaacttcttcttcttctttattttgtaaca |
224 |
Q |
| |
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|||| |||||||||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |
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| T |
13887791 |
agaaatacagctggcatgttgaagtttgttagggtttgctcaagttacttgtatcacaagtaacttcttcttcctctttattttgtaaca |
13887702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 27816410 - 27816210
Alignment:
| Q |
23 |
attgagtgaatgggttacaatgtgtaagcacttatttataagctaatgaaggtacattatatctatcataagctaactgcacagtaacactatctactct |
122 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||| || |||| ||| | || |||| |
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| T |
27816410 |
attgaatgaattagttacaatgtgtaagcatctatttataagctaatgagagtacattatatcaatcatatactaactacatagtatcacaa-ctcctct |
27816312 |
T |
|
| Q |
123 |
aactgtcacaacagaattacagctggcatagta-aagtttgttagggtttgctcaagttacttgcatcgcaagtaacttcttcttcttctttattttgta |
221 |
Q |
| |
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|||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
27816311 |
aactgtcacaacagaaa-acagctggcatgtttgaagtttgttagggtttgcttgagttacttgcatcacaagtaacttcttcttcctctttattttgta |
27816213 |
T |
|
| Q |
222 |
aca |
224 |
Q |
| |
|
||| |
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|
| T |
27816212 |
aca |
27816210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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