View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_low_11 (Length: 310)
Name: NF4070_low_11
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 38303003 - 38303288
Alignment:
| Q |
11 |
cataggagaacctcttgactatcttgtaagtgtgatatacaatacagccacaaaatgcaatagatgcaaagcacccatggataatatgtgacaacttatc |
110 |
Q |
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| T |
38303003 |
cataggagaacctcttgattatcttgtaagtgtgatatacaatacagccacaaaatgcaatagatgcaaagcacccatggataatatgtgacaacttatc |
38303102 |
T |
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| Q |
111 |
taatagaaaccaaacctgtnnnnnnn-ggatcacaatgttattacttagatatcaatatcactattacaaagctaatttgcatgttaattattaagcact |
209 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38303103 |
taatagaaaccaaacctgtaaaaaaaaggatcacaatgttattacttagatatcaatatcactattacaaagctaatttgcatgttaattattaagcact |
38303202 |
T |
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| Q |
210 |
aaacataagcattttaatagcaaaataccttaatgaggttaaagaggatatgaactaacaaagctccaatcaagaatggagctaaa |
295 |
Q |
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| T |
38303203 |
aaacataagcattttaatagcaaaataccttaatgaggttaaagaggatatgaactaacaaagctccaatcaagaatggagctaaa |
38303288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 38290219 - 38290336
Alignment:
| Q |
12 |
ataggagaacctcttgactatc-ttgtaagtgtgatatacaatacagccacaaaatgcaatagatgcaaagcacccatggataatatgtgacaacttatc |
110 |
Q |
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||||||||||||||||| ||| ||||| || ||||| || ||||| ||||||||| |||||||| ||||||||||||||| ||||||||||| ||| | |
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| T |
38290219 |
ataggagaacctcttga-tatggttgtatgtatgatacacgatacaaccacaaaatataatagatgtaaagcacccatggatcatatgtgacaatttacc |
38290317 |
T |
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| Q |
111 |
taatagaaaccaaacctgt |
129 |
Q |
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|||| ||||| |||||||| |
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| T |
38290318 |
taatggaaacgaaacctgt |
38290336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 38290405 - 38290457
Alignment:
| Q |
232 |
aaataccttaatgaggttaaagaggatatgaactaacaaagctccaatcaaga |
284 |
Q |
| |
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|||||||| |||||| ||||||||||| |||||||||||||||||| ||||| |
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| T |
38290405 |
aaatacctgaatgagaataaagaggataagaactaacaaagctccaaacaaga |
38290457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 18980353 - 18980247
Alignment:
| Q |
183 |
taatttgcatgttaattattaagcactaaacataagcattttaatagcaaaataccttaatgaggttaaagaggatatgaactaacaaagctccaatcaa |
282 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| | | ||| || |||||||||| |||||| | |||||||| |||||||||||||||||| ||| |
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| T |
18980353 |
taatttgcatgttaataattaagcactaaacataggtgtcttagtatcaaaatacctgaatgagacttgagaggataagaactaacaaagctccaaacaa |
18980254 |
T |
|
| Q |
283 |
gaatgga |
289 |
Q |
| |
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||||||| |
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| T |
18980253 |
gaatgga |
18980247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 19003539 - 19003435
Alignment:
| Q |
183 |
taatttgcatgttaattattaagcactaaacataagcattttaatagcaaaataccttaatgaggttaaagaggatatgaactaacaaagctccaatcaa |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | | |||||| || ||| || |||||| || ||| |||| |||||||||||||||||| ||| |
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| T |
19003539 |
taatttgcatgttaattattaagcactaaacataggtgtcttaatatcataattgctgaatgagactagagaagataagaactaacaaagctccaaacaa |
19003440 |
T |
|
| Q |
283 |
gaatg |
287 |
Q |
| |
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||||| |
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|
| T |
19003439 |
gaatg |
19003435 |
T |
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