View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_low_16 (Length: 264)
Name: NF4070_low_16
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 54794470 - 54794723
Alignment:
| Q |
1 |
ttggcaatagtttaagtagtttataagttaaactagtagctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794470 |
ttggcaatagtttaagtagtttataagttaaactagtagctaatagactatagttgaaagtttataaatgaaaagctagttgattgatattcaagtggtt |
54794569 |
T |
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| Q |
101 |
gttaaaattaggaagcgagctaactgatcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactagtttacaagttt |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54794570 |
gttaaaattagtaagcgagctaactgatcaacataaaatgacataaaagatatttgttgtaagctttaccaagagtaaccacaaactaatttacaagttt |
54794669 |
T |
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| Q |
201 |
gtcaaataagataagtctatgtcaaacaaactcaagcttcacacctgacctatg |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794670 |
gtcaaataagataagtctatgtcaaacaaactcaagcttcacacctgacctatg |
54794723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 52287168 - 52287320
Alignment:
| Q |
1 |
ttggcaatagtttaagtagtttataagttaaactagtagctaatagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52287168 |
ttggcaatagtttaagtagtttataagttaaactagtagctaatggactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtggtt |
52287267 |
T |
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| Q |
101 |
gttaaaattaggaagcgagctaactgatcaacataaaatgacataaaagatat |
153 |
Q |
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| T |
52287268 |
gttaaaattagttagcaaactaactgatcaacataaaatgacataaaagatat |
52287320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 52287391 - 52287484
Alignment:
| Q |
161 |
aagctttaccaagagtaaccacaaactagtttacaagtttgtcaaataagataagtctatgtcaaacaaactcaagcttcacacctgacctatg |
254 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
52287391 |
aagctttaccacgagtaaccacaaattagtttacaagtttgtcaaataagataggtctatgtcaaacaaactcaagcttcacacctgacatatg |
52287484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 802316 - 802468
Alignment:
| Q |
1 |
ttggcaatagtttaagtagtttataagttaaactagtagcta--atagactacagttgaaagtttataaatgaaaagctagttgattgatattcaagtgg |
98 |
Q |
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||||||||||| ||||||||||||||||||| ||| |||| | ||||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
802316 |
ttggcaatagtgtaagtagtttataagttaa-ctaatagcaactatagattatagttgaaagtttataaatgaaaagctagttgattgcaattcaagtgg |
802414 |
T |
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| Q |
99 |
ttgttaaaattaggaagcgagctaactgatcaacataaaatgacataaaagatat |
153 |
Q |
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|||||| ||||| |||| ||||||||| ||||| ||||||||| |||||||| |
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| T |
802415 |
ttgttagaattaattggcgaactaactgataaacat-aaatgacatgaaagatat |
802468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 34618543 - 34618484
Alignment:
| Q |
52 |
agttgaaagtttataaatgaaaagctagttgattgatattcaagtggttgttaaaattag |
111 |
Q |
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| T |
34618543 |
agttgaaagcttatagctgaaaaactagttgattgatattaaagtgtttggtaaaattag |
34618484 |
T |
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